Variant report

Variant	rs10138286
Chromosome Location	chr14:55571194-55571195
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:55568677..55571661-chr14:55571922..55577835,5	K562	blood:
2	chr14:55536490..55539101-chr14:55568903..55571706,2	K562	blood:
3	chr14:55568628..55573010-chr14:55614277..55618489,4	K562	blood:
4	chr14:55570137..55572731-chr14:55581864..55585022,3	MCF-7	breast:
5	chr14:55567648..55572808-chr14:55572945..55577245,19	MCF-7	breast:
6	chr14:55569932..55572391-chr14:55657772..55659443,2	K562	blood:
7	chr14:55568925..55571630-chr14:55613554..55616278,2	MCF-7	breast:
8	chr14:55550357..55576811-chr14:55577745..55605179,160	MCF-7	breast:
9	chr14:55517323..55520297-chr14:55568628..55571698,4	K562	blood:
10	chr14:55570108..55572293-chr14:55641654..55643309,2	K562	blood:
11	chr14:55516736..55518546-chr14:55570715..55573579,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000126787	Chromatin interaction
ENSG00000168175	Chromatin interaction
ENSG00000131981	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10133915	1.00[CEU][hapmap]
rs10135156	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10136880	1.00[CEU][hapmap]
rs10138550	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10141323	0.83[ASN][1000 genomes]
rs10498473	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2340932	1.00[CEU][hapmap];0.92[JPT][hapmap];0.82[YRI][hapmap];0.83[ASN][1000 genomes]
rs28379289	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28405981	0.83[ASN][1000 genomes]
rs2879891	1.00[CEU][hapmap]
rs6573008	0.81[JPT][hapmap]
rs7157520	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7157768	0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs7159490	0.81[JPT][hapmap]
rs8009660	1.00[CEU][hapmap]
rs8019707	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8021306	1.00[CEU][hapmap]
rs8022890	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55566600-55571600	Enhancers	Left Ventricle	heart
2	chr14:55566600-55571600	Enhancers	Sigmoid Colon	Sigmoid Colon
3	chr14:55566600-55571800	Enhancers	Small Intestine	intestine
4	chr14:55567200-55571400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
5	chr14:55567600-55571600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr14:55567800-55571600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr14:55568000-55572200	Enhancers	Primary T cells fromperipheralblood	blood
8	chr14:55568400-55571200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr14:55568400-55571600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr14:55568400-55571600	Enhancers	Right Atrium	heart
11	chr14:55568600-55571200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr14:55568600-55571200	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr14:55568600-55571200	Enhancers	Fetal Heart	heart
14	chr14:55568600-55571400	Enhancers	Primary B cells from peripheral blood	blood
15	chr14:55568600-55571400	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr14:55568600-55571400	Enhancers	Brain Hippocampus Middle	brain
17	chr14:55568600-55571600	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr14:55568600-55571600	Enhancers	Placenta	Placenta
19	chr14:55568600-55571600	Enhancers	Fetal Thymus	thymus
20	chr14:55568600-55571600	Enhancers	Placenta Amnion	Placenta Amnion
21	chr14:55568600-55571600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
22	chr14:55568600-55571600	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr14:55568600-55571600	Enhancers	Spleen	Spleen
24	chr14:55568600-55576000	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr14:55568600-55576200	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr14:55568800-55571200	Enhancers	Primary B cells from cord blood	blood
27	chr14:55568800-55571200	Enhancers	Primary hematopoietic stem cells	blood
28	chr14:55568800-55571400	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr14:55569000-55571200	Enhancers	Brain Anterior Caudate	brain
30	chr14:55569000-55571200	Enhancers	Right Ventricle	heart
31	chr14:55569200-55571600	Flanking Active TSS	GM12878-XiMat	blood
32	chr14:55569200-55572800	Weak transcription	Ovary	ovary
33	chr14:55569200-55574800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr14:55569200-55574800	Weak transcription	Gastric	stomach
35	chr14:55569600-55571400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr14:55569600-55571600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
37	chr14:55569800-55571200	Enhancers	iPS-20b Cell Line	embryonic stem cell
38	chr14:55569800-55571600	Enhancers	Lung	lung
39	chr14:55569800-55571600	Flanking Active TSS	HSMMtube	muscle
40	chr14:55570000-55571600	Enhancers	Esophagus	oesophagus
41	chr14:55570000-55571800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
42	chr14:55570000-55594800	Enhancers	Fetal Intestine Large	intestine
43	chr14:55570200-55571400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr14:55570200-55574000	Weak transcription	Fetal Muscle Trunk	muscle
45	chr14:55570400-55571200	Enhancers	HUES64 Cell Line	embryonic stem cell
46	chr14:55570400-55571200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr14:55570400-55571200	Enhancers	Adipose Nuclei	Adipose
48	chr14:55570400-55571200	Enhancers	Stomach Smooth Muscle	stomach
49	chr14:55570400-55571400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr14:55570400-55571400	Enhancers	HUVEC	blood vessel

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