Variant report

Variant	rs2340932
Chromosome Location	chr14:55617101-55617102
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:55517072..55520221-chr14:55614319..55617712,3	MCF-7	breast:
2	chr14:55568628..55573010-chr14:55614277..55618489,4	K562	blood:
3	chr14:55532973..55535677-chr14:55615169..55617966,2	MCF-7	breast:
4	chr14:55604463..55606860-chr14:55616784..55619184,2	K562	blood:
5	chr14:55604463..55607611-chr14:55616784..55619184,4	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-WDHD1-4	chr14:55617046-55617566	NONHSAT036990

No data

Variant related genes	Relation type
ENSG00000131981	Chromatin interaction
ENSG00000168175	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10129161	1.00[EUR][1000 genomes]
rs10132875	1.00[EUR][1000 genomes]
rs10133915	1.00[CEU][hapmap];0.94[YRI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10135156	1.00[CEU][hapmap];0.91[JPT][hapmap]
rs10136880	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10138286	1.00[CEU][hapmap];0.92[JPT][hapmap];0.82[YRI][hapmap];0.83[ASN][1000 genomes]
rs10138550	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10140881	0.82[ASN][1000 genomes]
rs10141323	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10498473	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11844443	0.83[ASN][1000 genomes]
rs1971474	1.00[EUR][1000 genomes]
rs2296490	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28379289	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs28405981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28547246	0.87[ASN][1000 genomes]
rs28676392	0.83[ASN][1000 genomes]
rs2879891	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3759668	1.00[EUR][1000 genomes]
rs6573008	0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs6650507	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7151339	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7157520	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7157768	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7159490	0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs73271796	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73273623	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8003961	0.83[ASN][1000 genomes]
rs8009660	1.00[CEU][hapmap];0.86[YRI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8012105	0.83[ASN][1000 genomes]
rs8017256	0.83[ASN][1000 genomes]
rs8019707	1.00[CEU][hapmap];0.92[JPT][hapmap]
rs8021306	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs8022890	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55598600-55656600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:55604000-55636400	Strong transcription	Fetal Thymus	thymus
3	chr14:55604400-55620800	Weak transcription	K562	blood
4	chr14:55604600-55627800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr14:55604800-55623200	Weak transcription	Brain Germinal Matrix	brain
6	chr14:55605000-55627600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr14:55605200-55656000	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr14:55605400-55657000	Weak transcription	Fetal Kidney	kidney
9	chr14:55606400-55626600	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr14:55606600-55656000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr14:55607000-55656000	Strong transcription	HUES48 Cell Line	embryonic stem cell
12	chr14:55607200-55652200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
13	chr14:55607600-55651800	Strong transcription	H1 Cell Line	embryonic stem cell
14	chr14:55607600-55655200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
15	chr14:55610000-55617800	Weak transcription	Primary hematopoietic stem cells	blood
16	chr14:55610600-55621600	Strong transcription	GM12878-XiMat	blood
17	chr14:55610600-55651600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr14:55610600-55655400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr14:55610600-55655600	Strong transcription	Dnd41	blood
20	chr14:55610800-55656000	Strong transcription	HUES6 Cell Line	embryonic stem cell
21	chr14:55611000-55656000	Weak transcription	Fetal Heart	heart
22	chr14:55611200-55622800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr14:55611200-55643400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr14:55611400-55621800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr14:55611400-55630200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr14:55611600-55620000	Weak transcription	Fetal Stomach	stomach
27	chr14:55611600-55628400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr14:55611600-55630000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr14:55611600-55656600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr14:55611800-55620000	Weak transcription	Fetal Muscle Leg	muscle
31	chr14:55612000-55619000	Weak transcription	HSMMtube	muscle
32	chr14:55612000-55621000	Weak transcription	Fetal Lung	lung
33	chr14:55612000-55622000	Weak transcription	Small Intestine	intestine
34	chr14:55612000-55623200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr14:55612400-55637400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr14:55613000-55621800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr14:55613400-55619000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr14:55613400-55621800	Weak transcription	Left Ventricle	heart
39	chr14:55613400-55626200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr14:55613400-55639200	Weak transcription	Fetal Intestine Small	intestine
41	chr14:55613400-55657800	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr14:55613600-55618600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr14:55614000-55619000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr14:55614000-55619200	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr14:55614000-55623200	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr14:55614000-55623600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr14:55614000-55624400	Weak transcription	Fetal Intestine Large	intestine
48	chr14:55614200-55617800	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr14:55614200-55617800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr14:55614200-55618600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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