Variant report

Variant	rs7157768
Chromosome Location	chr14:55597875-55597876
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:55368311..55371330-chr14:55594542..55598408,4	MCF-7	breast:
2	chr14:55516981..55523073-chr14:55594365..55600344,10	MCF-7	breast:
3	chr14:55587248..55591020-chr14:55595215..55599629,4	K562	blood:
4	chr14:55517037..55520851-chr14:55594266..55601656,13	MCF-7	breast:
5	chr14:55490753..55494051-chr14:55597379..55599922,4	MCF-7	breast:
6	chr14:55520859..55523802-chr14:55596862..55599089,2	MCF-7	breast:
7	chr14:55596607..55598705-chr14:55613153..55615282,2	MCF-7	breast:
8	chr14:55589520..55592355-chr14:55596993..55599725,2	K562	blood:
9	chr14:55597715..55602179-chr14:55607312..55610754,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000168175	Chromatin interaction
ENSG00000131981	Chromatin interaction
ENSG00000131979	Chromatin interaction
ENSG00000180008	Chromatin interaction
ENSG00000198554	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10129161	1.00[EUR][1000 genomes]
rs10132875	1.00[EUR][1000 genomes]
rs10133915	0.94[YRI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10135156	0.87[JPT][hapmap];0.80[ASN][1000 genomes]
rs10136880	1.00[EUR][1000 genomes]
rs10138286	0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs10138550	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10141323	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10498473	0.84[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11844443	0.81[ASN][1000 genomes]
rs1971474	1.00[EUR][1000 genomes]
rs2296490	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2340932	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28379289	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28405981	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28547246	0.85[ASN][1000 genomes]
rs28676392	0.81[ASN][1000 genomes]
rs2879891	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3759668	1.00[EUR][1000 genomes]
rs6573008	0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs6650507	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7151339	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7157520	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7159490	0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs73271796	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73273623	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8003961	0.81[ASN][1000 genomes]
rs8009660	0.88[YRI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8012105	0.81[ASN][1000 genomes]
rs8017256	0.81[ASN][1000 genomes]
rs8019707	0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs8021306	0.81[AMR][1000 genomes]
rs8022890	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55595200-55598400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:55595400-55606200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr14:55595600-55598000	Active TSS	Lung	lung
4	chr14:55595600-55598000	Active TSS	HSMMtube	muscle
5	chr14:55595600-55598200	Active TSS	Left Ventricle	heart
6	chr14:55595600-55598200	Active TSS	Ovary	ovary
7	chr14:55595600-55598200	Active TSS	Small Intestine	intestine
8	chr14:55595600-55598400	Active TSS	Right Ventricle	heart
9	chr14:55595600-55598600	Active TSS	Esophagus	oesophagus
10	chr14:55595600-55598600	Active TSS	Psoas Muscle	Psoas
11	chr14:55595600-55599000	Active TSS	Colonic Mucosa	Colon
12	chr14:55596200-55599000	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr14:55596200-55603200	Transcr. at gene 5' and 3'	Fetal Intestine Small	intestine
14	chr14:55596400-55598000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr14:55596400-55599000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
16	chr14:55596400-55600000	Weak transcription	K562	blood
17	chr14:55596600-55599200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
18	chr14:55596600-55606400	Transcr. at gene 5' and 3'	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr14:55596800-55598200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr14:55596800-55598800	Transcr. at gene 5' and 3'	Fetal Intestine Large	intestine
21	chr14:55596800-55600000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr14:55597000-55613000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr14:55597200-55598200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr14:55597200-55598200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
25	chr14:55597200-55598200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr14:55597200-55598200	Active TSS	Colon Smooth Muscle	Colon
27	chr14:55597200-55598200	Active TSS	Skeletal Muscle Female	skeletal muscle
28	chr14:55597200-55598200	Weak transcription	Spleen	Spleen
29	chr14:55597200-55598400	Enhancers	Primary neutrophils fromperipheralblood	blood
30	chr14:55597200-55598600	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr14:55597200-55598600	Active TSS	Stomach Smooth Muscle	stomach
32	chr14:55597200-55598800	Enhancers	Brain Cingulate Gyrus	brain
33	chr14:55597200-55599200	Enhancers	Primary monocytes fromperipheralblood	blood
34	chr14:55597200-55600000	Weak transcription	NH-A	brain
35	chr14:55597200-55602600	Weak transcription	Brain Angular Gyrus	brain
36	chr14:55597200-55602800	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr14:55597200-55602800	Weak transcription	Brain Substantia Nigra	brain
38	chr14:55597200-55603600	Weak transcription	HUVEC	blood vessel
39	chr14:55597200-55604000	Weak transcription	Aorta	Aorta
40	chr14:55597200-55604200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr14:55597200-55604600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr14:55597200-55604800	Weak transcription	GM12878-XiMat	blood
43	chr14:55597200-55605200	Weak transcription	A549	lung
44	chr14:55597200-55606600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr14:55597200-55607400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr14:55597400-55598000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
47	chr14:55597400-55598000	Weak transcription	Brain Hippocampus Middle	brain
48	chr14:55597400-55598000	Enhancers	Fetal Heart	heart
49	chr14:55597400-55598600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr14:55597400-55598800	Enhancers	HepG2	liver

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