Variant report

Variant	rs10138550
Chromosome Location	chr14:55578706-55578707
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55577758..55579306-chr14:55580638..55583471,2	MCF-7	breast:
2	chr14:55577226..55578815-chr14:55585126..55587716,2	K562	blood:
3	chr14:55568626..55570818-chr14:55578433..55580001,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10133915	1.00[CEU][hapmap];0.87[AMR][1000 genomes]
rs10135156	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10136880	1.00[CEU][hapmap]
rs10138286	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10141323	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10498473	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2296490	0.88[AMR][1000 genomes]
rs2340932	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs28379289	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28405981	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2879891	1.00[CEU][hapmap];0.87[AMR][1000 genomes]
rs6573008	0.88[JPT][hapmap]
rs6650507	0.88[AMR][1000 genomes]
rs7151339	0.88[AMR][1000 genomes]
rs7157520	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7157768	1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7159490	0.88[JPT][hapmap]
rs73271796	0.88[AMR][1000 genomes]
rs73273623	0.88[AMR][1000 genomes]
rs8009660	1.00[CEU][hapmap];0.87[AMR][1000 genomes]
rs8019707	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8021306	1.00[CEU][hapmap]
rs8022890	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55570000-55594800	Enhancers	Fetal Intestine Large	intestine
2	chr14:55575000-55589600	Weak transcription	Small Intestine	intestine
3	chr14:55575200-55581600	Weak transcription	Pancreas	Pancrea
4	chr14:55575200-55581600	Weak transcription	Spleen	Spleen
5	chr14:55575200-55582000	Weak transcription	Right Ventricle	heart
6	chr14:55575200-55582200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr14:55575200-55582200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr14:55575200-55583000	Weak transcription	Gastric	stomach
9	chr14:55575200-55584400	Weak transcription	Esophagus	oesophagus
10	chr14:55575400-55580600	Weak transcription	Duodenum Mucosa	Duodenum
11	chr14:55575400-55581400	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr14:55575400-55582200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr14:55575600-55584600	Weak transcription	Ovary	ovary
14	chr14:55575800-55584800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr14:55576200-55581600	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr14:55576400-55580200	Weak transcription	HepG2	liver
17	chr14:55576400-55582200	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr14:55576800-55582200	Weak transcription	K562	blood
19	chr14:55576800-55582800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr14:55576800-55584400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr14:55577600-55594800	Enhancers	Fetal Intestine Small	intestine
22	chr14:55578200-55582200	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr14:55578200-55584600	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr14:55578400-55579200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr14:55578400-55581000	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr14:55578400-55583400	Weak transcription	Fetal Muscle Leg	muscle
27	chr14:55578400-55584800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr14:55578400-55588000	Weak transcription	Fetal Muscle Trunk	muscle
29	chr14:55578600-55579000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin

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