Variant report

Variant	rs3742592
Chromosome Location	chr14:36840650-36840651
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PAX9-9	chr14:36840370-36841588	NONHSAT036430
2	lnc-PAX9-9	chr14:36840370-36841574	NONHSAT036431

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10133125	0.82[CEU][hapmap]
rs10139030	0.82[CEU][hapmap]
rs12884915	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs17104430	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2415332	0.82[CEU][hapmap];1.00[CHB][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap]
rs2415335	0.82[CEU][hapmap]
rs2899849	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs3168891	1.00[JPT][hapmap]
rs3762904	0.82[CEU][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap]
rs3805352	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs3805354	0.82[CEU][hapmap];0.84[TSI][hapmap]
rs3805355	0.82[CEU][hapmap];0.92[TSI][hapmap]
rs3842844	0.86[ASN][1000 genomes]
rs3850259	0.82[CEU][hapmap]
rs3850267	0.86[ASN][1000 genomes]
rs3850268	0.86[ASN][1000 genomes]
rs3861481	0.86[ASN][1000 genomes]
rs3909608	0.86[ASN][1000 genomes]
rs4900833	0.92[TSI][hapmap]
rs4901456	0.86[ASN][1000 genomes]
rs4901597	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.86[ASN][1000 genomes]
rs7141354	0.82[CEU][hapmap];0.92[TSI][hapmap]
rs7142835	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs7157811	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040256	chr14:36501452-37172046	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv542040	chr14:36501452-37172046	Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
3	nsv1047290	chr14:36564568-37445157	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
4	nsv1037952	chr14:36670484-37294692	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
5	nsv542042	chr14:36670484-37294692	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
6	nsv832771	chr14:36771007-36964041	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv974327	chr14:36840575-36841893	Inactive region	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links