Variant report

Variant	rs3842844
Chromosome Location	chr14:36816368-36816369
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10133125	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs10139030	1.00[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11156909	0.98[EUR][1000 genomes]
rs11558802	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11844502	0.98[EUR][1000 genomes]
rs12884915	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12890888	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12897795	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1535722	0.85[EUR][1000 genomes]
rs17104430	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2415332	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2415335	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs2415339	0.83[EUR][1000 genomes]
rs2553575	0.90[EUR][1000 genomes]
rs2899849	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3168891	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3742592	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.86[ASN][1000 genomes]
rs3762904	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3805352	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs3805353	0.98[EUR][1000 genomes]
rs3805354	1.00[CEU][hapmap];0.94[GIH][hapmap];0.92[TSI][hapmap];0.98[EUR][1000 genomes]
rs3805355	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs3844012	0.81[EUR][1000 genomes]
rs3844013	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3850257	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3850258	0.98[EUR][1000 genomes]
rs3850259	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs3850260	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3850267	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3850268	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3861477	0.98[EUR][1000 genomes]
rs3861481	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3909608	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3909615	0.91[EUR][1000 genomes]
rs4083518	0.92[EUR][1000 genomes]
rs4127807	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4378535	0.88[EUR][1000 genomes]
rs4898561	0.91[EUR][1000 genomes]
rs4898563	0.98[EUR][1000 genomes]
rs4898597	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4898598	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4900716	0.91[EUR][1000 genomes]
rs4900717	0.91[EUR][1000 genomes]
rs4900732	0.98[EUR][1000 genomes]
rs4900733	0.98[EUR][1000 genomes]
rs4900790	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4900833	0.82[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4900924	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4901456	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4901597	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6571742	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7140630	0.98[EUR][1000 genomes]
rs7141354	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs7142835	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7142956	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7146921	0.81[EUR][1000 genomes]
rs7154340	0.98[EUR][1000 genomes]
rs7155498	0.98[EUR][1000 genomes]
rs7157811	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7159366	0.98[EUR][1000 genomes]
rs8013261	0.86[EUR][1000 genomes]
rs9788479	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040256	chr14:36501452-37172046	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv542040	chr14:36501452-37172046	Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
3	nsv1047290	chr14:36564568-37445157	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
4	nsv1037952	chr14:36670484-37294692	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
5	nsv542042	chr14:36670484-37294692	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
6	esv3429093	chr14:36674701-36827119	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv3367425	chr14:36674721-36827089	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv832771	chr14:36771007-36964041	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv1054427	chr14:36780743-36819931	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:36814200-36816400	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr14:36814800-36816400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:36816200-36816400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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