Variant report

Variant	rs12890888
Chromosome Location	chr14:36848200-36848201
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:36847892..36849551-chr14:36851800..36853748,2	MCF-7	breast:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10133125	0.93[EUR][1000 genomes]
rs10139030	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11156909	0.93[EUR][1000 genomes]
rs11558802	0.93[EUR][1000 genomes]
rs11844502	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12897795	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1535722	0.81[EUR][1000 genomes]
rs2415332	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2415335	0.93[EUR][1000 genomes]
rs2553575	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2899849	0.93[EUR][1000 genomes]
rs3168891	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3762904	0.93[EUR][1000 genomes]
rs3805352	0.95[EUR][1000 genomes]
rs3805353	0.93[EUR][1000 genomes]
rs3805354	0.93[EUR][1000 genomes]
rs3805355	0.93[EUR][1000 genomes]
rs3842844	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3844013	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3850257	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3850258	0.93[EUR][1000 genomes]
rs3850259	0.93[EUR][1000 genomes]
rs3850260	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3850267	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3850268	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3861477	0.93[EUR][1000 genomes]
rs3861481	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3909608	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3909615	0.86[EUR][1000 genomes]
rs4083518	0.88[EUR][1000 genomes]
rs4127807	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4378535	0.84[EUR][1000 genomes]
rs4898561	0.86[EUR][1000 genomes]
rs4898563	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4898597	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4898598	0.93[EUR][1000 genomes]
rs4900716	0.86[EUR][1000 genomes]
rs4900717	0.86[EUR][1000 genomes]
rs4900732	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4900733	0.93[EUR][1000 genomes]
rs4900790	0.86[EUR][1000 genomes]
rs4900833	0.90[EUR][1000 genomes]
rs4900924	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4901456	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4901597	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6571742	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7140630	0.93[EUR][1000 genomes]
rs7141354	0.93[EUR][1000 genomes]
rs7142835	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7142956	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7154340	0.93[EUR][1000 genomes]
rs7155498	0.93[EUR][1000 genomes]
rs7157811	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7159366	0.93[EUR][1000 genomes]
rs8013261	0.82[EUR][1000 genomes]
rs9788479	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040256	chr14:36501452-37172046	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv542040	chr14:36501452-37172046	Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
3	nsv1047290	chr14:36564568-37445157	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
4	nsv1037952	chr14:36670484-37294692	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
5	nsv542042	chr14:36670484-37294692	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
6	nsv832771	chr14:36771007-36964041	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:36847000-36848200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr14:36848000-36848400	Enhancers	Right Atrium	heart

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