Variant report

Variant	rs4898597
Chromosome Location	chr14:36766979-36766980
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:36757907..36759500-chr14:36766689..36768870,2	MCF-7	breast:

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10133125	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10139030	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11156909	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11558802	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11844502	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12890888	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12897795	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1535722	0.92[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2415332	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2415334	0.90[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2415335	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2415339	0.83[EUR][1000 genomes]
rs2553575	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2899849	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3168891	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3762904	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3805352	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3805353	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3805354	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3805355	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3842844	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3844012	0.81[EUR][1000 genomes]
rs3844013	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3850257	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3850258	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3850259	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3850260	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3850267	0.95[EUR][1000 genomes]
rs3850268	0.95[EUR][1000 genomes]
rs3861477	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3861481	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3909608	0.95[EUR][1000 genomes]
rs3909615	0.91[EUR][1000 genomes]
rs4083518	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4127807	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4378535	0.88[EUR][1000 genomes]
rs4898561	0.91[EUR][1000 genomes]
rs4898563	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4898598	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4900716	0.91[EUR][1000 genomes]
rs4900717	0.91[EUR][1000 genomes]
rs4900732	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4900733	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4900790	0.91[EUR][1000 genomes]
rs4900833	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4900924	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4901456	1.00[EUR][1000 genomes]
rs4901597	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6571742	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7140630	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7141354	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7142835	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7142956	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7146921	0.81[EUR][1000 genomes]
rs7154340	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7155498	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7157811	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7159366	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8013261	0.86[EUR][1000 genomes]
rs9788479	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040256	chr14:36501452-37172046	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv542040	chr14:36501452-37172046	Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
3	nsv1047290	chr14:36564568-37445157	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
4	nsv1037952	chr14:36670484-37294692	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
5	nsv542042	chr14:36670484-37294692	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
6	esv3429093	chr14:36674701-36827119	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv3367425	chr14:36674721-36827089	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv1042408	chr14:36693910-36810554	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv542043	chr14:36693910-36810554	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	esv34543	chr14:36736349-36772564	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	esv2751271	chr14:36745649-36782949	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv534143	chr14:36747497-36787893	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:36761000-36785000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr14:36761400-36767000	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr14:36762000-36770400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr14:36762000-36778800	Weak transcription	Fetal Intestine Small	intestine
5	chr14:36762600-36769800	Weak transcription	NHLF	lung
6	chr14:36763400-36769600	Weak transcription	Colon Smooth Muscle	Colon
7	chr14:36763800-36777800	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr14:36764400-36784000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr14:36764600-36767600	Weak transcription	Hela-S3	cervix
10	chr14:36764800-36767400	Strong transcription	Left Ventricle	heart
11	chr14:36764800-36768400	Strong transcription	Fetal Muscle Leg	muscle
12	chr14:36764800-36769000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr14:36764800-36769000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr14:36764800-36769600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr14:36764800-36770800	Strong transcription	Fetal Muscle Trunk	muscle
16	chr14:36765000-36769200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr14:36765000-36769400	Strong transcription	HepG2	liver
18	chr14:36765000-36779400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr14:36765000-36781200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr14:36765200-36768400	Strong transcription	Primary T cells from cord blood	blood
21	chr14:36765200-36769000	Strong transcription	HSMM	muscle
22	chr14:36765200-36781400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
23	chr14:36765400-36767000	Weak transcription	NHEK	skin
24	chr14:36765400-36767400	Strong transcription	Aorta	Aorta
25	chr14:36765400-36767400	Strong transcription	Fetal Stomach	stomach
26	chr14:36765400-36767600	Strong transcription	Psoas Muscle	Psoas
27	chr14:36765400-36768400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr14:36765400-36768400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr14:36765400-36768400	Strong transcription	Ovary	ovary
30	chr14:36765400-36769000	Strong transcription	Primary hematopoietic stem cells	blood
31	chr14:36765400-36769000	Strong transcription	Brain Hippocampus Middle	brain
32	chr14:36765400-36771000	Strong transcription	Duodenum Smooth Muscle	Duodenum
33	chr14:36765400-36773000	Strong transcription	Fetal Brain Female	brain
34	chr14:36765400-36775200	Strong transcription	Adipose Nuclei	Adipose
35	chr14:36765400-36781400	Strong transcription	Placenta	Placenta
36	chr14:36765400-36788800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr14:36765600-36767200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr14:36765600-36767600	Strong transcription	Brain Cingulate Gyrus	brain
39	chr14:36765600-36767800	Strong transcription	Brain Angular Gyrus	brain
40	chr14:36765600-36768200	Strong transcription	Brain Substantia Nigra	brain
41	chr14:36765600-36768400	Strong transcription	Brain Germinal Matrix	brain
42	chr14:36765600-36768800	Strong transcription	HMEC	breast
43	chr14:36765600-36769200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr14:36765600-36770800	Strong transcription	Fetal Lung	lung
45	chr14:36765600-36781000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr14:36765800-36767400	Strong transcription	Gastric	stomach
47	chr14:36765800-36767400	Strong transcription	Stomach Smooth Muscle	stomach
48	chr14:36765800-36767400	Strong transcription	Thymus	Thymus
49	chr14:36765800-36767600	Weak transcription	Dnd41	blood
50	chr14:36765800-36767800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links