Variant report

Variant	rs2415339
Chromosome Location	chr14:36739287-36739288
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:36733892..36736595-chr14:36737409..36740158,4	K562	blood:
2	chr14:36733892..36735443-chr14:36737409..36739659,2	K562	blood:
3	chr14:36738662..36740717-chr14:36743320..36745881,2	MCF-7	breast:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10133125	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs10139030	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs11156909	0.81[EUR][1000 genomes]
rs11558802	0.81[EUR][1000 genomes]
rs11844502	0.81[EUR][1000 genomes]
rs12884915	1.00[CEU][hapmap]
rs12897795	0.83[EUR][1000 genomes]
rs17104430	1.00[CEU][hapmap]
rs2415332	1.00[CEU][hapmap]
rs2415335	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2553575	0.93[EUR][1000 genomes]
rs2899849	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs3168891	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs3742592	0.82[CEU][hapmap]
rs3762904	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs3805352	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs3805353	0.81[EUR][1000 genomes]
rs3805354	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs3805355	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs3842844	0.83[EUR][1000 genomes]
rs3844012	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3844013	0.85[EUR][1000 genomes]
rs3850257	0.83[EUR][1000 genomes]
rs3850258	0.81[EUR][1000 genomes]
rs3850259	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs3850260	0.83[EUR][1000 genomes]
rs3861477	0.81[EUR][1000 genomes]
rs3909615	0.84[EUR][1000 genomes]
rs4083518	0.90[EUR][1000 genomes]
rs4127807	0.83[EUR][1000 genomes]
rs4378535	0.86[EUR][1000 genomes]
rs4898561	0.84[EUR][1000 genomes]
rs4898563	0.81[EUR][1000 genomes]
rs4898597	0.83[EUR][1000 genomes]
rs4898598	0.81[EUR][1000 genomes]
rs4900716	0.84[EUR][1000 genomes]
rs4900717	0.84[EUR][1000 genomes]
rs4900732	0.81[EUR][1000 genomes]
rs4900733	0.81[EUR][1000 genomes]
rs4900833	0.82[CEU][hapmap]
rs4900924	0.83[EUR][1000 genomes]
rs4901456	0.83[EUR][1000 genomes]
rs4901597	1.00[CEU][hapmap]
rs6571742	0.83[EUR][1000 genomes]
rs7140630	0.81[EUR][1000 genomes]
rs7141354	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7142835	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs7142956	0.83[EUR][1000 genomes]
rs7146921	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7154340	0.81[EUR][1000 genomes]
rs7155498	0.81[EUR][1000 genomes]
rs7157811	0.83[EUR][1000 genomes]
rs7159366	0.81[EUR][1000 genomes]
rs8013261	0.89[EUR][1000 genomes]
rs9788479	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051045	chr14:36116503-36764947	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv542038	chr14:36116503-36764947	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv1040256	chr14:36501452-37172046	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
4	nsv542040	chr14:36501452-37172046	Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
5	nsv1041441	chr14:36545463-36756347	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	nsv542041	chr14:36545463-36756347	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv1047290	chr14:36564568-37445157	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
8	nsv1037952	chr14:36670484-37294692	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
9	nsv542042	chr14:36670484-37294692	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
10	esv3429093	chr14:36674701-36827119	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	esv3367425	chr14:36674721-36827089	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
12	nsv1042408	chr14:36693910-36810554	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
13	nsv542043	chr14:36693910-36810554	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
14	esv34543	chr14:36736349-36772564	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:36736600-36739600	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr14:36736600-36740200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr14:36736600-36740400	Weak transcription	K562	blood
4	chr14:36737000-36739400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr14:36737000-36741000	Enhancers	H1 Cell Line	embryonic stem cell
6	chr14:36737000-36741600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr14:36737600-36740600	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr14:36737800-36740600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr14:36738000-36740800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr14:36738200-36740600	Enhancers	H9 Cell Line	embryonic stem cell
11	chr14:36738600-36739400	Enhancers	Brain Germinal Matrix	brain
12	chr14:36738600-36740600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr14:36738800-36740600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
14	chr14:36739000-36740400	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr14:36739000-36741200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr14:36739000-36741400	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr14:36739200-36739600	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr14:36739200-36740800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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