Variant report

Variant	rs3762904
Chromosome Location	chr14:36790795-36790796
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAZ	chr14:36790667-36790858	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr14:36778592..36784393-chr14:36785409..36790832,9	K562	blood:
2	chr14:36783190..36784933-chr14:36788355..36791806,3	MCF-7	breast:
3	chr14:36538483..36541249-chr14:36788541..36791272,2	MCF-7	breast:

Variant related genes	Relation type
MBIP	TF binding region
ENSG00000257585	Chromatin interaction
ENSG00000151332	Chromatin interaction

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10133125	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10139030	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11156909	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11558802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11844502	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12884915	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs12890888	0.93[EUR][1000 genomes]
rs12897795	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1535722	0.83[EUR][1000 genomes]
rs17104430	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2415332	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs2415335	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2415339	0.81[EUR][1000 genomes]
rs2553575	0.88[EUR][1000 genomes]
rs2899849	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3168891	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3742592	0.82[CEU][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap]
rs3805352	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3805353	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3805354	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[GIH][hapmap];0.96[LWK][hapmap];0.92[MEX][hapmap];0.96[MKK][hapmap];0.92[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3805355	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3842844	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3844012	0.84[EUR][1000 genomes]
rs3844013	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3850257	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3850258	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3850259	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3850260	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3850267	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3850268	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3861477	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3861481	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3909608	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3909615	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs4083518	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4127807	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4378535	0.91[EUR][1000 genomes]
rs4898561	0.93[EUR][1000 genomes]
rs4898563	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4898597	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4898598	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4900716	0.93[EUR][1000 genomes]
rs4900717	0.93[EUR][1000 genomes]
rs4900732	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4900733	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4900790	0.93[EUR][1000 genomes]
rs4900833	0.82[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs4900924	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4901456	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4901597	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6571742	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7140630	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7141354	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[LWK][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7142835	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7142956	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7146921	0.84[EUR][1000 genomes]
rs7147634	0.82[AFR][1000 genomes]
rs7154340	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7155498	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7157811	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7159366	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8013261	0.89[EUR][1000 genomes]
rs9788479	0.81[AFR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040256	chr14:36501452-37172046	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv542040	chr14:36501452-37172046	Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
3	nsv1047290	chr14:36564568-37445157	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
4	nsv1037952	chr14:36670484-37294692	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
5	nsv542042	chr14:36670484-37294692	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
6	esv3429093	chr14:36674701-36827119	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv3367425	chr14:36674721-36827089	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv1042408	chr14:36693910-36810554	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv542043	chr14:36693910-36810554	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	esv2752577	chr14:36768276-36805529	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv1040487	chr14:36770813-36805621	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv832771	chr14:36771007-36964041	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
13	nsv1054427	chr14:36780743-36819931	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv518747	chr14:36787226-36809926	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:36788400-36790800	Active TSS	A549	lung
2	chr14:36789000-36791000	Active TSS	Brain Inferior Temporal Lobe	brain
3	chr14:36790400-36790800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr14:36790400-36791000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr14:36790400-36791600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr14:36790600-36791000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr14:36790600-36791000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr14:36790600-36791000	Bivalent Enhancer	HepG2	liver
9	chr14:36790600-36791200	Enhancers	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links