Variant report

Variant	rs3742733
Chromosome Location	chr14:77920545-77920546
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:77916294..77921948-chr14:77922001..77926650,9	K562	blood:
2	chr14:77919778..77921305-chr14:77931867..77934170,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151445	Chromatin interaction
ENSG00000212371	Chromatin interaction
ENSG00000100591	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10450933	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17105759	0.81[ASN][1000 genomes]
rs17751122	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17751319	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17751370	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17824298	0.91[ASN][1000 genomes]
rs17824358	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2142188	0.91[ASN][1000 genomes]
rs2293802	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3742729	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs3742731	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs3742732	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs3742739	1.00[JPT][hapmap]
rs4531669	1.00[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041985	chr14:77877421-77936969	Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv832835	chr14:77906706-78095207	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77887200-77920600	Strong transcription	Primary T cells from cord blood	blood
2	chr14:77888600-77920600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr14:77891600-77923200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr14:77894200-77923000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr14:77896200-77923200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr14:77897400-77920600	Strong transcription	Osteobl	bone
7	chr14:77901800-77923000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr14:77904000-77920600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr14:77905400-77920600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr14:77905800-77920600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr14:77905800-77920600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr14:77905800-77920600	Strong transcription	Fetal Muscle Trunk	muscle
13	chr14:77907400-77920600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr14:77908200-77921600	Weak transcription	K562	blood
15	chr14:77909800-77921800	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr14:77909800-77921800	Weak transcription	Stomach Mucosa	stomach
17	chr14:77909800-77923200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr14:77913200-77920600	Strong transcription	Thymus	Thymus
19	chr14:77914000-77920600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr14:77915600-77922800	Weak transcription	Small Intestine	intestine
21	chr14:77915800-77923000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr14:77916000-77922600	Weak transcription	Hela-S3	cervix
23	chr14:77916000-77923200	Weak transcription	Aorta	Aorta
24	chr14:77916200-77923200	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr14:77916200-77923400	Weak transcription	Pancreas	Pancrea
26	chr14:77916400-77923200	Weak transcription	Esophagus	oesophagus
27	chr14:77916600-77921600	Weak transcription	Fetal Brain Female	brain
28	chr14:77916600-77922800	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr14:77916600-77922800	Weak transcription	Rectal Smooth Muscle	rectum
30	chr14:77916800-77922600	Weak transcription	Fetal Heart	heart
31	chr14:77916800-77922800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr14:77916800-77922800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr14:77917000-77922800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr14:77917400-77922800	Weak transcription	Fetal Brain Male	brain
35	chr14:77917600-77922800	Weak transcription	Brain Anterior Caudate	brain
36	chr14:77917800-77922800	Weak transcription	Stomach Smooth Muscle	stomach
37	chr14:77917800-77923000	Weak transcription	Psoas Muscle	Psoas
38	chr14:77918000-77922200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr14:77918200-77922800	Weak transcription	HMEC	breast
40	chr14:77918200-77923200	Weak transcription	Gastric	stomach
41	chr14:77918200-77923400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr14:77918400-77922000	Weak transcription	Brain Substantia Nigra	brain
43	chr14:77918400-77922200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr14:77918400-77922800	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr14:77918400-77922800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr14:77918400-77922800	Weak transcription	NHDF-Ad	bronchial
47	chr14:77918400-77923200	Weak transcription	Lung	lung
48	chr14:77919400-77922800	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr14:77919600-77922800	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr14:77919600-77923400	Weak transcription	Spleen	Spleen

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