Variant report

Variant	rs3742732
Chromosome Location	chr14:77942316-77942317
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:77935817..77939399-chr14:77941876..77944072,3	MCF-7	breast:
2	chr14:77936196..77939744-chr14:77940216..77943828,4	MCF-7	breast:
3	chr14:77934732..77937127-chr14:77940971..77942567,2	K562	blood:

Variant related genes	Relation type
ENSG00000100591	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10145609	1.00[CHB][hapmap]
rs1063270	1.00[CHB][hapmap]
rs1063271	1.00[CHB][hapmap]
rs11159266	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11159268	1.00[CHB][hapmap]
rs11159269	1.00[CHB][hapmap]
rs12433806	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs12435437	0.93[CEU][hapmap];1.00[CHB][hapmap];0.86[MEX][hapmap];0.84[AMR][1000 genomes]
rs12436210	0.84[AMR][1000 genomes]
rs12436626	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs12437312	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12437361	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12887556	1.00[CHB][hapmap]
rs17751319	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17751370	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17751562	0.93[CEU][hapmap];1.00[CHB][hapmap];0.80[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs17824238	0.85[CEU][hapmap];0.86[MEX][hapmap];0.89[AMR][1000 genomes]
rs17824298	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17824358	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2142188	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2293802	1.00[JPT][hapmap]
rs2364602	1.00[CHB][hapmap]
rs3742729	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3742731	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3742733	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs3742739	1.00[JPT][hapmap]
rs4531669	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6574383	1.00[CHB][hapmap]
rs8003820	1.00[CHB][hapmap]
rs8007669	1.00[CHB][hapmap]
rs8011528	1.00[CHB][hapmap]
rs8177539	1.00[CHB][hapmap];0.86[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832835	chr14:77906706-78095207	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3742732	ZDHHC22	cis	lymphoblastoid	seeQTL

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77936000-77944600	Weak transcription	GM12878-XiMat	blood
2	chr14:77936200-77948600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr14:77936400-77944800	Weak transcription	Primary B cells from peripheral blood	blood
4	chr14:77936400-77945000	Weak transcription	Gastric	stomach
5	chr14:77936400-77946000	Weak transcription	Brain Angular Gyrus	brain
6	chr14:77936600-77947200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr14:77936800-77945000	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr14:77937000-77945000	Weak transcription	Spleen	Spleen
9	chr14:77940400-77942400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
10	chr14:77940600-77948600	Weak transcription	Fetal Kidney	kidney
11	chr14:77940800-77945400	Strong transcription	HepG2	liver
12	chr14:77941400-77942400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr14:77941600-77942400	Strong transcription	Placenta	Placenta

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