Variant report

Variant	rs12433806
Chromosome Location	chr14:77967933-77967934
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:77967774-77967945	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:77786622..77788558-chr14:77966272..77968373,2	MCF-7	breast:

Variant related genes	Relation type
ISM2	TF binding region
ENSG00000009830	Chromatin interaction
ENSG00000100577	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10145609	1.00[CHB][hapmap]
rs1063270	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1063271	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11159268	1.00[CHB][hapmap]
rs11159269	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12435437	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12436626	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12887556	1.00[CHB][hapmap]
rs17105963	1.00[JPT][hapmap]
rs17751319	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs17751370	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs17751562	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17751644	1.00[JPT][hapmap]
rs17751746	1.00[JPT][hapmap]
rs17824238	0.92[CEU][hapmap]
rs17824358	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs17824646	1.00[JPT][hapmap]
rs2364602	1.00[CHB][hapmap]
rs3742729	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs3742731	0.86[CEU][hapmap];1.00[CHB][hapmap]
rs3742732	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs4531669	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs6574383	1.00[CHB][hapmap]
rs8003820	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8007669	1.00[CHB][hapmap]
rs8011528	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8177539	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832835	chr14:77906706-78095207	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77965600-77977600	Weak transcription	Aorta	Aorta
2	chr14:77965800-77974600	Weak transcription	A549	lung
3	chr14:77966000-77973400	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr14:77966000-77977400	Weak transcription	HMEC	breast
5	chr14:77966200-77970600	Weak transcription	HSMM	muscle
6	chr14:77966400-77972800	Weak transcription	Esophagus	oesophagus
7	chr14:77966400-77974000	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr14:77966400-77976800	Weak transcription	Spleen	Spleen
9	chr14:77966400-77977000	Weak transcription	Pancreas	Pancrea
10	chr14:77966400-77977600	Weak transcription	Gastric	stomach
11	chr14:77966600-77977000	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr14:77966600-77977600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr14:77966600-77977800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr14:77966800-77972600	Weak transcription	Osteobl	bone
15	chr14:77966800-77972800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr14:77966800-77973200	Weak transcription	Placenta	Placenta
17	chr14:77967000-77974200	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr14:77967200-77970000	Enhancers	HepG2	liver
19	chr14:77967200-77971600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr14:77967200-77972600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr14:77967200-77978000	Weak transcription	Stomach Mucosa	stomach
22	chr14:77967400-77974600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr14:77967400-77977000	Weak transcription	NH-A	brain
24	chr14:77967600-77969400	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr14:77967600-77969600	Weak transcription	Fetal Intestine Small	intestine
26	chr14:77967600-77972200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr14:77967600-77972600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr14:77967600-77972600	Weak transcription	HSMMtube	muscle
29	chr14:77967800-77972800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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