Variant report

Variant	rs17105963
Chromosome Location	chr14:78014715-78014716
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:78013590..78016333-chr14:78173040..78175809,2	MCF-7	breast:
2	chr14:78014573..78016241-chr14:78173226..78176092,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100601	Chromatin interaction
ENSG00000119705	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1063270	1.00[JPT][hapmap]
rs1063271	1.00[JPT][hapmap]
rs11159269	1.00[JPT][hapmap]
rs12433806	1.00[JPT][hapmap]
rs12435437	1.00[JPT][hapmap]
rs12436428	0.90[ASN][1000 genomes]
rs12436626	1.00[JPT][hapmap]
rs17751562	1.00[JPT][hapmap]
rs17751644	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17751746	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17824646	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17824742	0.95[ASN][1000 genomes]
rs17824754	0.95[ASN][1000 genomes]
rs72683266	0.95[ASN][1000 genomes]
rs8003820	1.00[JPT][hapmap]
rs8011528	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832835	chr14:77906706-78095207	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1053810	chr14:77987871-78148320	Genic enhancers Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv1051554	chr14:78004196-78122980	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77970200-78047200	Weak transcription	Fetal Heart	heart
2	chr14:77972000-78018000	Weak transcription	Hela-S3	cervix
3	chr14:77978800-78042200	Weak transcription	Fetal Brain Male	brain
4	chr14:77985200-78014800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr14:77985400-78015000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr14:77987400-78021000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr14:77987800-78014800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr14:77987800-78015000	Weak transcription	Thymus	Thymus
9	chr14:77987800-78015600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr14:77987800-78060000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr14:77988000-78014800	Weak transcription	HMEC	breast
12	chr14:77988000-78015200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr14:77988000-78015600	Weak transcription	Right Ventricle	heart
14	chr14:77988400-78029400	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr14:77997800-78018800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr14:78002000-78014800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr14:78002000-78015000	Weak transcription	Lung	lung
18	chr14:78002200-78020800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr14:78004000-78014800	Weak transcription	Ovary	ovary
20	chr14:78006800-78019000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr14:78008200-78015600	Weak transcription	NHLF	lung
22	chr14:78008200-78019000	Strong transcription	Primary T helper cells fromperipheralblood	blood
23	chr14:78009200-78014800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr14:78009200-78015400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr14:78009600-78014800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr14:78009600-78015600	Weak transcription	Brain Germinal Matrix	brain
27	chr14:78009600-78019400	Strong transcription	Primary T cells fromperipheralblood	blood
28	chr14:78009600-78021200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr14:78009600-78030000	Strong transcription	Primary neutrophils fromperipheralblood	blood
30	chr14:78009800-78014800	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr14:78009800-78050800	Weak transcription	Psoas Muscle	Psoas
32	chr14:78010000-78016400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr14:78010000-78018800	Strong transcription	NH-A	brain
34	chr14:78010000-78019800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr14:78010000-78029800	Strong transcription	Primary T cells from cord blood	blood
36	chr14:78010200-78015800	Weak transcription	Rectal Smooth Muscle	rectum
37	chr14:78010200-78019000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr14:78010200-78020400	Strong transcription	Monocytes-CD14+_RO01746	blood
39	chr14:78010200-78026800	Weak transcription	Stomach Mucosa	stomach
40	chr14:78010400-78015200	Weak transcription	HUVEC	blood vessel
41	chr14:78010400-78017200	Strong transcription	Primary hematopoietic stem cells	blood
42	chr14:78010400-78018600	Strong transcription	Muscle Satellite Cultured Cells	--
43	chr14:78010400-78030000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
44	chr14:78010600-78015000	Weak transcription	Gastric	stomach
45	chr14:78010600-78016400	Strong transcription	HUES48 Cell Line	embryonic stem cell
46	chr14:78010600-78017000	Strong transcription	Adipose Nuclei	Adipose
47	chr14:78010600-78017200	Strong transcription	Sigmoid Colon	Sigmoid Colon
48	chr14:78010600-78019200	Strong transcription	Rectal Mucosa Donor 29	rectum
49	chr14:78010600-78025000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr14:78010800-78016400	Strong transcription	Primary B cells from cord blood	blood

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