Variant report

Variant	rs12435437
Chromosome Location	chr14:77962046-77962047
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:77753080..77755812-chr14:77961106..77963096,2	K562	blood:

Variant related genes	Relation type
ENSG00000009830	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10145609	1.00[CHB][hapmap];0.88[CHD][hapmap]
rs1063270	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1063271	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11159266	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11159267	1.00[ASN][1000 genomes]
rs11159268	1.00[CHB][hapmap];0.88[CHD][hapmap]
rs11159269	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12431905	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12431925	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12433321	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12433404	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12433806	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12434449	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12436210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12436626	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12437312	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12437361	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12887556	1.00[CHB][hapmap]
rs17105963	1.00[JPT][hapmap]
rs17751319	0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[MEX][hapmap]
rs17751370	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs17751562	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17751644	1.00[JPT][hapmap]
rs17751746	1.00[ASW][hapmap];1.00[JPT][hapmap]
rs17824238	0.92[CEU][hapmap]
rs17824358	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs17824646	1.00[ASW][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];0.84[TSI][hapmap]
rs2142188	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2364602	1.00[CHB][hapmap]
rs28419564	1.00[ASN][1000 genomes]
rs3742729	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs3742731	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs3742732	0.93[CEU][hapmap];1.00[CHB][hapmap];0.86[MEX][hapmap];0.84[AMR][1000 genomes]
rs4531669	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs56040359	0.86[AMR][1000 genomes]
rs59765982	1.00[ASN][1000 genomes]
rs6574383	1.00[CHB][hapmap]
rs73316987	1.00[ASN][1000 genomes]
rs8003820	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs8007669	1.00[CHB][hapmap]
rs8011528	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs8177539	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832835	chr14:77906706-78095207	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77953400-77964200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:77957400-77963200	Weak transcription	HepG2	liver
3	chr14:77961600-77962200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr14:77961800-77962200	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr14:77961800-77962200	Flanking Active TSS	Placenta	Placenta
6	chr14:77961800-77962200	Enhancers	Left Ventricle	heart
7	chr14:77961800-77962200	Enhancers	Right Atrium	heart
8	chr14:77962000-77962200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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