Variant report

Variant	rs8011528
Chromosome Location	chr14:77981829-77981830
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:77786159..77787856-chr14:77981780..77983376,2	MCF-7	breast:
2	chr14:77924432..77927894-chr14:77979984..77985197,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100577	Chromatin interaction
ENSG00000009830	Chromatin interaction
ENSG00000100591	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10145609	1.00[CHB][hapmap]
rs1063270	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1063271	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11159267	1.00[ASN][1000 genomes]
rs11159268	1.00[CHB][hapmap]
rs11159269	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12431905	0.92[ASN][1000 genomes]
rs12431925	1.00[ASN][1000 genomes]
rs12433321	1.00[ASN][1000 genomes]
rs12433404	1.00[ASN][1000 genomes]
rs12433806	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12434449	1.00[ASN][1000 genomes]
rs12435437	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12436210	1.00[ASN][1000 genomes]
rs12436626	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12437312	1.00[ASN][1000 genomes]
rs12437361	0.84[ASN][1000 genomes]
rs12887556	1.00[CHB][hapmap]
rs17105963	1.00[JPT][hapmap]
rs17751319	1.00[CHB][hapmap]
rs17751370	1.00[CHB][hapmap]
rs17751562	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17751644	1.00[JPT][hapmap]
rs17751746	1.00[JPT][hapmap]
rs17824358	1.00[CHB][hapmap]
rs17824646	1.00[JPT][hapmap]
rs2364602	1.00[CHB][hapmap]
rs28419564	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3742729	1.00[CHB][hapmap]
rs3742731	1.00[CHB][hapmap]
rs3742732	1.00[CHB][hapmap]
rs4531669	1.00[CHB][hapmap]
rs59765982	1.00[ASN][1000 genomes]
rs6574383	1.00[CHB][hapmap]
rs73316987	1.00[ASN][1000 genomes]
rs8003820	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8007669	1.00[CHB][hapmap]
rs8177539	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832835	chr14:77906706-78095207	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77970200-78047200	Weak transcription	Fetal Heart	heart
2	chr14:77970600-77988600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr14:77970800-77992600	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr14:77971000-77991400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr14:77971600-77991800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr14:77972000-78018000	Weak transcription	Hela-S3	cervix
7	chr14:77972200-77991400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr14:77972200-77991600	Strong transcription	Primary B cells from cord blood	blood
9	chr14:77972400-77987000	Weak transcription	Psoas Muscle	Psoas
10	chr14:77972600-77991400	Strong transcription	Primary B cells from peripheral blood	blood
11	chr14:77972600-77992000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr14:77972800-77984400	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr14:77972800-77988200	Strong transcription	Primary T cells from cord blood	blood
14	chr14:77973000-77988600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr14:77973200-77988600	Strong transcription	Primary T cells fromperipheralblood	blood
16	chr14:77974000-77989800	Strong transcription	Primary T helper cells fromperipheralblood	blood
17	chr14:77974600-77985000	Strong transcription	Primary hematopoietic stem cells	blood
18	chr14:77975200-77988400	Strong transcription	Primary neutrophils fromperipheralblood	blood
19	chr14:77975800-77990000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr14:77978000-78013400	Weak transcription	NHDF-Ad	bronchial
21	chr14:77978400-77986600	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr14:77978400-77992000	Weak transcription	NHLF	lung
23	chr14:77978600-77987600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr14:77978600-77992400	Weak transcription	Fetal Lung	lung
25	chr14:77978600-78014600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr14:77978800-77982200	Weak transcription	A549	lung
27	chr14:77978800-77982600	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr14:77978800-77983200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr14:77978800-77983800	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr14:77978800-77983800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr14:77978800-77983800	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr14:77978800-77983800	Weak transcription	Colonic Mucosa	Colon
33	chr14:77978800-77984000	Weak transcription	Colon Smooth Muscle	Colon
34	chr14:77978800-77984000	Weak transcription	Left Ventricle	heart
35	chr14:77978800-77984200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr14:77978800-77984200	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr14:77978800-77984400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr14:77978800-77984400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr14:77978800-77984400	Weak transcription	Gastric	stomach
40	chr14:77978800-77986000	Weak transcription	Small Intestine	intestine
41	chr14:77978800-77987000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr14:77978800-77989000	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr14:77978800-77989400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr14:77978800-77991400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr14:77978800-77992800	Weak transcription	Fetal Brain Female	brain
46	chr14:77978800-78042200	Weak transcription	Fetal Brain Male	brain
47	chr14:77979000-77982400	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr14:77979000-77982400	Weak transcription	Liver	Liver
49	chr14:77979000-77982600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr14:77979000-77982600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links