Variant report

Variant	rs17751562
Chromosome Location	chr14:77977493-77977494
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10145609	1.00[CHB][hapmap];0.88[CHD][hapmap]
rs1063270	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1063271	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11159266	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11159267	1.00[ASN][1000 genomes]
rs11159268	1.00[CHB][hapmap];0.88[CHD][hapmap]
rs11159269	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12431905	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12431925	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12433321	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12433404	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12433806	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12434449	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12435437	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12436210	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12436626	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12437312	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12437361	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12887556	1.00[CHB][hapmap]
rs17105963	1.00[JPT][hapmap]
rs17751319	0.92[CEU][hapmap];1.00[CHB][hapmap];0.80[MEX][hapmap]
rs17751370	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs17751644	1.00[JPT][hapmap]
rs17751746	1.00[JPT][hapmap];0.80[MEX][hapmap]
rs17824238	0.92[CEU][hapmap]
rs17824358	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs17824646	0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap]
rs2364602	1.00[CHB][hapmap]
rs28419564	1.00[ASN][1000 genomes]
rs3742729	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs3742731	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs3742732	0.93[CEU][hapmap];1.00[CHB][hapmap];0.80[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs4531669	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs56040359	0.96[AMR][1000 genomes]
rs59765982	1.00[ASN][1000 genomes]
rs6574383	1.00[CHB][hapmap]
rs73316987	1.00[ASN][1000 genomes]
rs8003820	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs8007669	1.00[CHB][hapmap]
rs8011528	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs8177539	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832835	chr14:77906706-78095207	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77965600-77977600	Weak transcription	Aorta	Aorta
2	chr14:77966400-77977600	Weak transcription	Gastric	stomach
3	chr14:77966600-77977600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr14:77966600-77977800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr14:77967200-77978000	Weak transcription	Stomach Mucosa	stomach
6	chr14:77968200-77977600	Weak transcription	Small Intestine	intestine
7	chr14:77968400-77977600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr14:77968400-77977600	Weak transcription	GM12878-XiMat	blood
9	chr14:77968400-77977800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr14:77968600-77977600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr14:77969000-77977600	Weak transcription	Thymus	Thymus
12	chr14:77969400-77977600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr14:77969400-77977800	Weak transcription	NHEK	skin
14	chr14:77969600-77977600	Weak transcription	Brain Anterior Caudate	brain
15	chr14:77969600-77977600	Weak transcription	NHLF	lung
16	chr14:77969800-77977600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr14:77970200-77977600	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr14:77970200-77977600	Weak transcription	Brain Hippocampus Middle	brain
19	chr14:77970200-77977600	Weak transcription	Colonic Mucosa	Colon
20	chr14:77970200-78047200	Weak transcription	Fetal Heart	heart
21	chr14:77970400-77977800	Weak transcription	Right Ventricle	heart
22	chr14:77970600-77977800	Weak transcription	Fetal Kidney	kidney
23	chr14:77970600-77979200	Strong transcription	HSMM	muscle
24	chr14:77970600-77988600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr14:77970800-77977600	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr14:77970800-77992600	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr14:77971000-77977600	Weak transcription	Brain Substantia Nigra	brain
28	chr14:77971000-77991400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr14:77971600-77977600	Weak transcription	Brain Angular Gyrus	brain
30	chr14:77971600-77991800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr14:77971800-77977600	Weak transcription	Ovary	ovary
32	chr14:77971800-77977600	Weak transcription	K562	blood
33	chr14:77972000-77977600	Weak transcription	Fetal Brain Female	brain
34	chr14:77972000-77979000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr14:77972000-78018000	Weak transcription	Hela-S3	cervix
36	chr14:77972200-77991400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr14:77972200-77991600	Strong transcription	Primary B cells from cord blood	blood
38	chr14:77972400-77987000	Weak transcription	Psoas Muscle	Psoas
39	chr14:77972600-77977600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr14:77972600-77978000	Weak transcription	Fetal Brain Male	brain
41	chr14:77972600-77979000	Strong transcription	Duodenum Smooth Muscle	Duodenum
42	chr14:77972600-77979200	Strong transcription	Duodenum Mucosa	Duodenum
43	chr14:77972600-77991400	Strong transcription	Primary B cells from peripheral blood	blood
44	chr14:77972600-77992000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr14:77972800-77977600	Weak transcription	Stomach Smooth Muscle	stomach
46	chr14:77972800-77979000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr14:77972800-77979200	Strong transcription	Rectal Mucosa Donor 29	rectum
48	chr14:77972800-77984400	Strong transcription	Primary monocytes fromperipheralblood	blood
49	chr14:77972800-77988200	Strong transcription	Primary T cells from cord blood	blood
50	chr14:77973000-77977600	Weak transcription	Brain Cingulate Gyrus	brain

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