Variant report

Variant	rs12437312
Chromosome Location	chr14:77959068-77959069
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:77954845..77956608-chr14:77958215..77960506,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1063271	1.00[ASN][1000 genomes]
rs11159266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11159267	1.00[ASN][1000 genomes]
rs11159269	0.92[ASN][1000 genomes]
rs12431905	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12431925	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12433321	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12433404	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12434449	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12435437	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12436210	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12436626	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12437361	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17751370	0.81[AMR][1000 genomes]
rs17751562	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17824298	0.81[AMR][1000 genomes]
rs17824358	0.81[AMR][1000 genomes]
rs2142188	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28419564	1.00[ASN][1000 genomes]
rs3742729	0.83[EUR][1000 genomes]
rs3742731	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3742732	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4531669	0.81[AMR][1000 genomes]
rs56040359	0.82[AMR][1000 genomes]
rs59765982	1.00[ASN][1000 genomes]
rs73316987	1.00[ASN][1000 genomes]
rs8003820	1.00[ASN][1000 genomes]
rs8011528	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832835	chr14:77906706-78095207	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77953400-77964200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:77957400-77963200	Weak transcription	HepG2	liver
3	chr14:77957600-77960000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr14:77958800-77961400	Weak transcription	Placenta	Placenta

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