Variant report

Variant	rs2142188
Chromosome Location	chr14:77943842-77943843
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11159266	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12431905	1.00[AFR][1000 genomes]
rs12434449	1.00[AFR][1000 genomes]
rs12435437	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs12436210	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs12436626	1.00[AFR][1000 genomes]
rs12437312	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12437361	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17751319	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17751370	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17824238	0.89[AMR][1000 genomes]
rs17824298	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17824358	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3742729	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3742731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3742732	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3742733	0.91[ASN][1000 genomes]
rs4531669	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832835	chr14:77906706-78095207	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77936000-77944600	Weak transcription	GM12878-XiMat	blood
2	chr14:77936200-77948600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr14:77936400-77944800	Weak transcription	Primary B cells from peripheral blood	blood
4	chr14:77936400-77945000	Weak transcription	Gastric	stomach
5	chr14:77936400-77946000	Weak transcription	Brain Angular Gyrus	brain
6	chr14:77936600-77947200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr14:77936800-77945000	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr14:77937000-77945000	Weak transcription	Spleen	Spleen
9	chr14:77940600-77948600	Weak transcription	Fetal Kidney	kidney
10	chr14:77940800-77945400	Strong transcription	HepG2	liver
11	chr14:77942400-77944800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr14:77942400-77949000	Weak transcription	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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