Variant report

Variant	rs3743038
Chromosome Location	chr15:41694743-41694744
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:580)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:580 , 50 per page) page: 1 2 3 4 5 6 7 ... 12

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ETS1	chr15:41694428-41694907	A549	lung:	n/a	n/a
2	CEBPB	chr15:41694479-41694976	A549	lung:	n/a	n/a
3	PML	chr15:41694095-41695057	GM12878	blood:	n/a	n/a
4	MAX	chr15:41694148-41694989	ECC-1	luminal epithelium:	n/a	n/a
5	USF1	chr15:41694511-41694857	K562	blood:	n/a	n/a
6	POLR2A	chr15:41694422-41694865	A549	lung:	n/a	n/a
7	POLR2A	chr15:41694312-41694987	MCF-7	breast:	n/a	n/a
8	FOXM1	chr15:41694368-41695049	GM12878	blood:	n/a	n/a
9	CREB1	chr15:41694242-41694967	HepG2	liver:	n/a	n/a
10	SIN3AK20	chr15:41694454-41694817	HepG2	liver:	n/a	n/a
11	CBX3	chr15:41694235-41695015	HCT-116	colon:	n/a	n/a
12	ZBTB33	chr15:41694476-41694900	HCT-116	colon:	n/a	n/a
13	POLR2A	chr15:41694249-41694940	PBDE	blood:	n/a	n/a
14	USF1	chr15:41694567-41694823	HepG2	liver:	n/a	n/a
15	SP1	chr15:41694465-41694856	GM12878	blood:	n/a	n/a
16	HMGN3	chr15:41694478-41694775	K562	blood:	n/a	n/a
17	BCLAF1	chr15:41694417-41695008	K562	blood:	n/a	n/a
18	TCF3	chr15:41694386-41694893	GM12878	blood:	n/a	n/a
19	POLR2A	chr15:41694240-41695061	H1-hESC	embryonic stem cell:	n/a	n/a
20	NRF1	chr15:41694523-41694898	GM12878	blood:	n/a	n/a
21	POLR2A	chr15:41693921-41695067	PFSK-1	brain:	n/a	n/a
22	TAF1	chr15:41694437-41694962	GM12891	blood:	n/a	n/a
23	BCLAF1	chr15:41694328-41694952	GM12878	blood:	n/a	n/a
24	REST	chr15:41694154-41694990	H1-neurons	neurons:	n/a	n/a
25	EP300	chr15:41694494-41694867	HepG2	liver:	n/a	n/a
26	EP300	chr15:41694501-41694888	GM12878	blood:	n/a	n/a
27	RFX5	chr15:41694570-41694889	GM12878	blood:	n/a	n/a
28	EP300	chr15:41694435-41694903	A549	lung:	n/a	n/a
29	MAZ	chr15:41694490-41694866	HepG2	liver:	n/a	n/a
30	TAF1	chr15:41694237-41694986	K562	blood:	n/a	n/a
31	PML	chr15:41694403-41694898	MCF-7	breast:	n/a	n/a
32	POLR2A	chr15:41694211-41695358	GM12878	blood:	n/a	n/a
33	E2F6	chr15:41694421-41695000	A549	lung:	n/a	chr15:41694630-41694640
34	MYBL2	chr15:41694362-41695028	HepG2	liver:	n/a	n/a
35	NFIC	chr15:41694386-41694880	HepG2	liver:	n/a	n/a
36	MTA3	chr15:41694201-41695073	GM12878	blood:	n/a	n/a
37	FOSL2	chr15:41694456-41694935	A549	lung:	n/a	n/a
38	REST	chr15:41694372-41694914	PFSK-1	brain:	n/a	n/a
39	ZNF143	chr15:41694450-41694898	K562	blood:	n/a	n/a
40	TAF1	chr15:41694406-41694933	MCF-7	breast:	n/a	n/a
41	RUNX3	chr15:41694210-41694971	GM12878	blood:	n/a	n/a
42	ETS1	chr15:41694536-41694885	A549	lung:	n/a	n/a
43	POLR2A	chr15:41694415-41694967	HCT-116	colon:	n/a	n/a
44	CHD2	chr15:41694371-41694903	GM12878	blood:	n/a	n/a
45	ZNF384	chr15:41694142-41695078	K562	blood:	n/a	n/a
46	POLR2A	chr15:41694329-41694988	GM19099	blood:	n/a	n/a
47	FOXA2	chr15:41694509-41694834	HepG2	liver:	n/a	n/a
48	GABPA	chr15:41694532-41694841	Hela-S3	cervix:	n/a	n/a
49	GABPA	chr15:41694295-41694907	A549	lung:	n/a	n/a
50	BRCA1	chr15:41694523-41694905	Hela-S3	cervix:	n/a	n/a

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:41693181..41695675-chr15:41697885..41700748,3	MCF-7	breast:
2	chr15:41624767..41626294-chr15:41694606..41696147,2	MCF-7	breast:
3	chr15:41693108..41695955-chr15:41707708..41710721,3	MCF-7	breast:
4	chr15:41694307..41694945-chr18:12883793..12884443,2	Hela-S3	cervix:
5	chr15:41693334..41695836-chr15:42066849..42069073,2	K562	blood:
6	chr15:41621801..41625398-chr15:41692470..41696241,5	K562	blood:
7	chr15:41694405..41696232-chr15:41951783..41954163,3	K562	blood:
8	chr15:41694353..41694945-chr2:85765838..85766781,2	Hela-S3	cervix:
9	chr15:41694166..41694806-chr7:10979376..10980136,2	Hela-S3	cervix:
10	chr15:41625051..41627000-chr15:41692954..41695637,2	K562	blood:
11	chr15:41694268..41695075-chr19:14116740..14117258,2	Hela-S3	cervix:
12	chr15:41693118..41696014-chr15:41707415..41710821,4	MCF-7	breast:
13	chr15:41574856..41577423-chr15:41692996..41695992,2	K562	blood:
14	chr15:41694080..41694852-chr19:50979360..50980331,2	Hela-S3	cervix:
15	chr13:111367203..111367863-chr15:41694333..41695057,2	Hela-S3	cervix:
16	chr1:45987127..45988093-chr15:41694465..41695072,2	Hela-S3	cervix:

No data

Variant related genes	Relation type
NDUFAF1	TF binding region
ENSG00000161671	Chromatin interaction
ENSG00000104147	Chromatin interaction
ENSG00000137815	Chromatin interaction
ENSG00000271185	Chromatin interaction
ENSG00000153487	Chromatin interaction
ENSG00000168906	Chromatin interaction
ENSG00000247556	Chromatin interaction
ENSG00000132005	Chromatin interaction
ENSG00000137802	Chromatin interaction
ENSG00000142530	Chromatin interaction
ENSG00000189043	Chromatin interaction
ENSG00000174197	Chromatin interaction
ENSG00000117450	Chromatin interaction
ENSG00000175354	Chromatin interaction
ENSG00000137804	Chromatin interaction

Extended variants
information (count: 106 )
Associated
traits (count: 19 )

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs10152497	0.96[ASN][1000 genomes]
rs10153010	0.96[ASN][1000 genomes]
rs10467974	0.92[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10518718	0.86[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11630191	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11631770	0.83[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.93[TSI][hapmap];0.86[YRI][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11633799	0.95[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.88[ASN][1000 genomes]
rs11852609	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12324291	0.93[ASN][1000 genomes]
rs13379756	0.95[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap]
rs1655556	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16971767	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16971798	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16971806	0.86[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs16971832	0.91[JPT][hapmap]
rs16971834	0.85[CHD][hapmap];0.91[JPT][hapmap]
rs1757455	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1757456	0.84[CEU][hapmap]
rs1757463	0.81[CHB][hapmap]
rs2015781	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2777491	0.88[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.90[MEX][hapmap];0.98[TSI][hapmap];0.89[YRI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28393472	0.96[ASN][1000 genomes]
rs28526381	1.00[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28557159	1.00[ASW][hapmap];0.90[GIH][hapmap];0.84[MEX][hapmap];0.93[YRI][hapmap]
rs28578057	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28583065	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28600680	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28643296	0.89[ASN][1000 genomes]
rs28655070	0.88[ASN][1000 genomes]
rs28716108	0.96[ASN][1000 genomes]
rs28792672	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28847691	0.85[ASN][1000 genomes]
rs316605	0.94[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[CHD][hapmap];0.90[GIH][hapmap];0.91[JPT][hapmap];0.84[LWK][hapmap];0.89[MEX][hapmap];0.98[TSI][hapmap];0.90[YRI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs316609	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs316610	0.94[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];0.90[GIH][hapmap];0.91[JPT][hapmap];0.82[LWK][hapmap];0.90[MEX][hapmap];0.98[TSI][hapmap];0.90[YRI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs316613	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs316614	0.88[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[CHD][hapmap];0.90[GIH][hapmap];0.91[JPT][hapmap];0.81[LWK][hapmap];0.90[MEX][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs316615	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs316617	0.81[CEU][hapmap];0.81[CHB][hapmap];0.84[TSI][hapmap]
rs35826725	0.86[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs55782852	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58335029	0.85[ASN][1000 genomes]
rs58910172	0.89[ASN][1000 genomes]
rs59590312	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61037359	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61127691	0.89[ASN][1000 genomes]
rs6650519	0.91[ASN][1000 genomes]
rs66538814	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66591771	0.81[EUR][1000 genomes]
rs7161772	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7163649	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7163788	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.90[MEX][hapmap];0.98[TSI][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7165675	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7167498	0.86[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7167729	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7168177	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7168307	0.94[ASW][hapmap];0.90[GIH][hapmap];0.84[MEX][hapmap];0.90[YRI][hapmap]
rs7172148	0.89[ASN][1000 genomes]
rs7175690	0.89[ASN][1000 genomes]
rs7175800	0.86[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7176314	0.89[ASN][1000 genomes]
rs7176505	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7176588	0.95[CEU][hapmap];0.86[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7177641	0.94[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.90[MEX][hapmap];0.98[TSI][hapmap];0.90[YRI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7178634	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap]
rs7178777	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap]
rs7180418	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap]
rs7180492	0.80[ASN][1000 genomes]
rs7181560	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7181911	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7182667	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7182700	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7183337	0.85[ASN][1000 genomes]
rs73404980	0.85[ASN][1000 genomes]
rs73404987	0.91[ASN][1000 genomes]
rs73404994	0.96[ASN][1000 genomes]
rs73404995	0.96[ASN][1000 genomes]
rs73404996	0.96[ASN][1000 genomes]
rs73405000	0.93[ASN][1000 genomes]
rs73405001	0.93[ASN][1000 genomes]
rs73407109	0.96[ASN][1000 genomes]
rs8023530	0.94[ASW][hapmap];0.90[GIH][hapmap];0.84[MEX][hapmap];0.81[MKK][hapmap];0.93[YRI][hapmap]
rs8023619	0.85[ASN][1000 genomes]
rs8024774	0.84[CEU][hapmap];0.83[TSI][hapmap]
rs8026197	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8027626	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8032838	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8034626	0.91[ASN][1000 genomes]
rs8034819	0.89[ASN][1000 genomes]
rs8036498	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8036527	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8037574	0.94[ASW][hapmap];0.90[GIH][hapmap];0.83[LWK][hapmap];0.84[MEX][hapmap];0.83[YRI][hapmap]
rs8037824	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8041325	0.88[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.98[TSI][hapmap];0.86[YRI][hapmap]
rs823716	1.00[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap];0.90[YRI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs919961	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9302109	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9672866	0.92[ASN][1000 genomes]
rs9972288	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044438	chr15:41560160-41745480	Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
2	nsv1038923	chr15:41585028-41754890	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1045142	chr15:41585044-41738314	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
4	nsv1039283	chr15:41620499-41745480	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	63 gene(s)	inside rSNPs	diseases
5	nsv933757	chr15:41641236-41773058	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	27 gene(s)	inside rSNPs	diseases
6	nsv524476	chr15:41689232-41820200	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	nsv569232	chr15:41694377-41730246	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	25 gene(s)	inside rSNPs	diseases

mRNA abundance (count:19)

SNP	Gene	Cis/trans	Tissue	Source
rs3743038	NDUFAF1	cis	lymphoblastoid	seeQTL
rs3743038	NDUFAF1	cis	parietal	SCAN
rs3743038	NDUFAF1	cis	cerebellum	SCAN
rs3743038	OIP5-AS1	cis	Adipose Subcutaneous	GTEx
rs3743038	RPAP1	cis	parietal	SCAN
rs3743038	STARD9	cis	cerebellum	SCAN
rs3743038	OIP5-AS1	cis	Nerve Tibial	GTEx
rs3743038	NDUFAF1	Cis_1M	lymphoblastoid	RTeQTL
rs3743038	NDUFAF1	cis	Thyroid	GTEx
rs3743038	NDUFAF1	cis	multi-tissue	Pritchard
rs3743038	KRTAP4-7	cis	uninvolved skin	skin_eQTL
rs3743038	NDUFAF1	cis	Muscle Skeletal	GTEx
rs3743038	NUSAP1	cis	cerebellum	SCAN
rs3743038	NDUFAF1	cis	Esophagus Muscularis	GTEx
rs3743038	OIP5-AS1	cis	Artery Tibial	GTEx
rs3743038	NUSAP1	cis	parietal	SCAN
rs3743038	KRTAP4-7	Cis_1M	lymphoblastoid	RTeQTL
rs3743038	NDUFAF1	cis	Heart Left Ventricle	GTEx
rs3743038	LOC729082	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41693400-41695400	Active TSS	HUES64 Cell Line	embryonic stem cell
2	chr15:41693600-41695200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:41693600-41695200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr15:41693600-41695200	Active TSS	Rectal Mucosa Donor 29	rectum
5	chr15:41693600-41695200	Active TSS	Rectal Smooth Muscle	rectum
6	chr15:41693600-41695200	Active TSS	GM12878-XiMat	blood
7	chr15:41693600-41695200	Active TSS	Osteobl	bone
8	chr15:41693600-41695400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr15:41693600-41695400	Active TSS	HUES6 Cell Line	embryonic stem cell
10	chr15:41693600-41695400	Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr15:41693600-41695400	Active TSS	Brain Angular Gyrus	brain
12	chr15:41693600-41695600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr15:41693600-41695600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr15:41693600-41695600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr15:41693600-41695600	Active TSS	Skeletal Muscle Male	skeletal muscle
16	chr15:41693600-41695600	Active TSS	Stomach Smooth Muscle	stomach
17	chr15:41693600-41695600	Active TSS	HSMM	muscle
18	chr15:41693800-41695000	Active TSS	iPS-18 Cell Line	embryonic stem cell
19	chr15:41693800-41695200	Active TSS	H1 Cell Line	embryonic stem cell
20	chr15:41693800-41695200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr15:41693800-41695200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr15:41693800-41695200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr15:41693800-41695200	Active TSS	Placenta	Placenta
24	chr15:41693800-41695200	Active TSS	Fetal Stomach	stomach
25	chr15:41693800-41695200	Active TSS	Fetal Thymus	thymus
26	chr15:41693800-41695200	Active TSS	Gastric	stomach
27	chr15:41693800-41695200	Active TSS	Ovary	ovary
28	chr15:41693800-41695200	Active TSS	Right Ventricle	heart
29	chr15:41693800-41695200	Active TSS	Skeletal Muscle Female	skeletal muscle
30	chr15:41693800-41695200	Active TSS	K562	blood
31	chr15:41693800-41695200	Active TSS	NHEK	skin
32	chr15:41693800-41695400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr15:41693800-41695400	Active TSS	iPS-15b Cell Line	embryonic stem cell
34	chr15:41693800-41695400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
35	chr15:41693800-41695400	Active TSS	Brain Anterior Caudate	brain
36	chr15:41693800-41695400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
37	chr15:41693800-41695400	Active TSS	Pancreatic Islets	Pancreatic Islet
38	chr15:41693800-41695400	Active TSS	Hela-S3	cervix
39	chr15:41693800-41695400	Active TSS	HSMMtube	muscle
40	chr15:41693800-41695400	Active TSS	NHLF	lung
41	chr15:41693800-41695600	Active TSS	H9 Cell Line	embryonic stem cell
42	chr15:41693800-41695600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr15:41693800-41695600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr15:41693800-41695600	Active TSS	Breast Myoepithelial Primary Cells	Breast
45	chr15:41693800-41695600	Active TSS	Muscle Satellite Cultured Cells	--
46	chr15:41693800-41695600	Active TSS	Colonic Mucosa	Colon
47	chr15:41693800-41695600	Active TSS	Duodenum Smooth Muscle	Duodenum
48	chr15:41693800-41695600	Active TSS	Fetal Brain Female	brain
49	chr15:41693800-41695600	Active TSS	Fetal Intestine Large	intestine
50	chr15:41693800-41695600	Active TSS	Fetal Intestine Small	intestine

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