Variant report

Variant	rs7183337
Chromosome Location	chr15:41632049-41632050
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:41624828..41628220-chr15:41629366..41632167,7	K562	blood:
2	chr15:41631604..41634470-chr15:41694334..41696072,2	K562	blood:

Variant related genes	Relation type
ENSG00000137804	Chromatin interaction
ENSG00000137806	Chromatin interaction

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10152497	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10153010	0.89[ASN][1000 genomes]
rs10467974	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10518718	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11549913	0.91[AFR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11633799	0.87[ASN][1000 genomes]
rs12324291	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16971767	0.92[ASN][1000 genomes]
rs16971798	0.88[ASN][1000 genomes]
rs16971806	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2015781	0.91[ASN][1000 genomes]
rs28393472	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28526381	0.92[ASN][1000 genomes]
rs28578057	0.92[ASN][1000 genomes]
rs28583065	0.92[ASN][1000 genomes]
rs28600680	0.85[ASN][1000 genomes]
rs28643296	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28655070	0.81[ASN][1000 genomes]
rs28716108	0.87[ASN][1000 genomes]
rs28792672	0.83[ASN][1000 genomes]
rs35826725	0.82[ASN][1000 genomes]
rs3743038	0.85[ASN][1000 genomes]
rs55782852	0.92[ASN][1000 genomes]
rs58335029	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58910172	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59590312	0.83[ASN][1000 genomes]
rs61037359	0.91[ASN][1000 genomes]
rs61127691	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6650519	0.89[ASN][1000 genomes]
rs66538814	0.85[ASN][1000 genomes]
rs7161772	0.92[ASN][1000 genomes]
rs7163649	0.91[ASN][1000 genomes]
rs7163788	0.80[ASN][1000 genomes]
rs7165675	0.92[ASN][1000 genomes]
rs7167498	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7167729	0.80[ASN][1000 genomes]
rs7172148	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7175690	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7175800	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7176314	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7176505	0.84[ASN][1000 genomes]
rs7176588	0.91[ASN][1000 genomes]
rs7178777	0.80[ASN][1000 genomes]
rs7181560	0.94[ASN][1000 genomes]
rs7181911	0.85[ASN][1000 genomes]
rs7182667	0.84[ASN][1000 genomes]
rs73404980	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73404987	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73404994	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73404995	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73404996	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73405000	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73405001	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73407109	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8023619	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8026197	0.80[ASN][1000 genomes]
rs8027626	0.80[ASN][1000 genomes]
rs8032838	0.92[ASN][1000 genomes]
rs8034626	0.90[ASN][1000 genomes]
rs8034819	0.83[ASN][1000 genomes]
rs8036498	0.92[ASN][1000 genomes]
rs919961	0.88[ASN][1000 genomes]
rs9302109	0.92[ASN][1000 genomes]
rs9672866	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9972288	0.82[ASN][1000 genomes]
rs9972547	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044438	chr15:41560160-41745480	Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
2	nsv1038923	chr15:41585028-41754890	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1045142	chr15:41585044-41738314	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
4	nsv1039283	chr15:41620499-41745480	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41625400-41670200	Weak transcription	Gastric	stomach
2	chr15:41625600-41659200	Weak transcription	Lung	lung
3	chr15:41625800-41665800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr15:41625800-41694200	Weak transcription	Small Intestine	intestine
5	chr15:41626000-41642000	Weak transcription	Ovary	ovary
6	chr15:41626000-41665200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr15:41626200-41633600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:41626200-41640600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr15:41626200-41643400	Weak transcription	Spleen	Spleen
10	chr15:41626200-41658200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr15:41626200-41678200	Weak transcription	Liver	Liver
12	chr15:41626200-41680200	Weak transcription	Fetal Brain Male	brain
13	chr15:41626400-41677800	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr15:41626400-41678400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr15:41626600-41643400	Weak transcription	Primary B cells from cord blood	blood
16	chr15:41626800-41632200	Weak transcription	Fetal Kidney	kidney
17	chr15:41626800-41641200	Weak transcription	Placenta	Placenta
18	chr15:41626800-41642800	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr15:41626800-41643200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr15:41626800-41643400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr15:41626800-41686400	Weak transcription	Rectal Smooth Muscle	rectum
22	chr15:41627000-41632200	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr15:41627000-41632400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr15:41627000-41632600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr15:41627000-41632600	Weak transcription	NH-A	brain
26	chr15:41627000-41633000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr15:41627000-41633000	Weak transcription	Duodenum Mucosa	Duodenum
28	chr15:41627000-41633000	Weak transcription	Fetal Brain Female	brain
29	chr15:41627000-41633400	Weak transcription	NHLF	lung
30	chr15:41627000-41633800	Weak transcription	Fetal Lung	lung
31	chr15:41627000-41638000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr15:41627000-41672800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr15:41627200-41632200	Weak transcription	A549	lung
34	chr15:41627200-41632400	Weak transcription	HSMM	muscle
35	chr15:41627200-41637000	Weak transcription	Brain Germinal Matrix	brain
36	chr15:41627200-41676800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr15:41627400-41633600	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr15:41627400-41668000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr15:41627400-41673000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr15:41628200-41673000	Strong transcription	HUES64 Cell Line	embryonic stem cell
41	chr15:41628600-41672800	Strong transcription	HUES6 Cell Line	embryonic stem cell
42	chr15:41628600-41673800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr15:41628800-41654400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr15:41629000-41632200	Weak transcription	Thymus	Thymus
45	chr15:41629000-41633800	Weak transcription	Primary hematopoietic stem cells	blood
46	chr15:41629000-41672000	Weak transcription	Primary T cells from cord blood	blood
47	chr15:41629000-41673000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr15:41629400-41672400	Strong transcription	Fetal Stomach	stomach
49	chr15:41629400-41672800	Strong transcription	HUES48 Cell Line	embryonic stem cell
50	chr15:41629400-41673600	Strong transcription	Primary hematopoietic stem cells short term culture	blood

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