Variant report

Variant	rs9972547
Chromosome Location	chr15:41573347-41573348
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr15:41573303-41574092	SK-N-SH	brain:	n/a	chr15:41573688-41573699
2	GATA3	chr15:41573290-41574047	A549	lung:	n/a	n/a

Variant related genes	Relation type
OIP5-AS1	TF binding region

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10152497	0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10152702	0.96[ASN][1000 genomes]
rs10153010	0.80[ASN][1000 genomes]
rs10467974	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10518718	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11549913	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11633799	0.88[ASN][1000 genomes]
rs11852609	0.81[ASN][1000 genomes]
rs11857631	0.92[ASN][1000 genomes]
rs12324291	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16952331	0.80[EUR][1000 genomes]
rs16971767	0.83[ASN][1000 genomes]
rs16971806	0.95[EUR][1000 genomes]
rs16971832	0.80[EUR][1000 genomes]
rs16971834	0.82[EUR][1000 genomes]
rs2015781	0.82[ASN][1000 genomes]
rs2412610	0.82[EUR][1000 genomes]
rs28393472	0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28526381	0.83[ASN][1000 genomes]
rs28578057	0.83[ASN][1000 genomes]
rs28583065	0.83[ASN][1000 genomes]
rs28643296	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28655070	0.82[EUR][1000 genomes]
rs28847691	0.82[EUR][1000 genomes]
rs2899014	0.82[EUR][1000 genomes]
rs55782852	0.83[ASN][1000 genomes]
rs58335029	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58910172	0.86[AFR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61037359	0.84[ASN][1000 genomes]
rs61127691	0.86[AFR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6650519	0.86[ASN][1000 genomes]
rs7161772	0.83[ASN][1000 genomes]
rs7163649	0.84[ASN][1000 genomes]
rs7165675	0.83[ASN][1000 genomes]
rs7167498	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7172148	0.95[EUR][1000 genomes]
rs7175690	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7175800	0.85[AFR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7176314	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7176505	0.86[ASN][1000 genomes]
rs7176588	0.84[ASN][1000 genomes]
rs7183337	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73404980	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73404987	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73404994	0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73404995	0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73404996	0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73405000	0.95[EUR][1000 genomes]
rs73405001	0.91[EUR][1000 genomes]
rs73407109	0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8023619	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8032838	0.83[ASN][1000 genomes]
rs8034626	0.81[ASN][1000 genomes]
rs8036498	0.83[ASN][1000 genomes]
rs9302109	0.83[ASN][1000 genomes]
rs9672866	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045455	chr15:41536624-41620534	Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1044438	chr15:41560160-41745480	Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41524200-41575800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:41525200-41575400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr15:41525800-41575200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr15:41536600-41573600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr15:41543000-41575200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr15:41549200-41575200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr15:41550400-41575600	Weak transcription	Fetal Brain Male	brain
8	chr15:41552400-41574600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr15:41552600-41575200	Weak transcription	GM12878-XiMat	blood
10	chr15:41552800-41575800	Weak transcription	Primary hematopoietic stem cells	blood
11	chr15:41556400-41574400	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr15:41556800-41575200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr15:41556800-41575200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr15:41556800-41575400	Weak transcription	Psoas Muscle	Psoas
15	chr15:41556800-41575800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr15:41556800-41575800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr15:41557000-41575400	Weak transcription	Fetal Heart	heart
18	chr15:41557200-41575200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr15:41557200-41575200	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr15:41559000-41575400	Weak transcription	Brain Germinal Matrix	brain
21	chr15:41562000-41574000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr15:41563000-41575400	Weak transcription	Brain Hippocampus Middle	brain
23	chr15:41564000-41575400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr15:41564000-41575400	Weak transcription	HUVEC	blood vessel
25	chr15:41564200-41575200	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr15:41564200-41575400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr15:41564200-41576200	Weak transcription	Small Intestine	intestine
28	chr15:41569600-41575400	Weak transcription	Fetal Brain Female	brain
29	chr15:41569600-41575400	Weak transcription	Stomach Mucosa	stomach
30	chr15:41569600-41575600	Weak transcription	Fetal Kidney	kidney
31	chr15:41570600-41574000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr15:41570800-41573800	Enhancers	HepG2	liver
33	chr15:41571000-41574800	Weak transcription	Primary B cells from peripheral blood	blood
34	chr15:41571800-41575200	Weak transcription	Fetal Intestine Small	intestine
35	chr15:41572000-41574000	Strong transcription	Liver	Liver
36	chr15:41572000-41574800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr15:41572000-41575200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr15:41572000-41575400	Weak transcription	Fetal Lung	lung
39	chr15:41572000-41576200	Weak transcription	Spleen	Spleen
40	chr15:41572200-41573400	Weak transcription	HSMM	muscle
41	chr15:41572200-41573800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr15:41572200-41575200	Weak transcription	Brain Substantia Nigra	brain
43	chr15:41572200-41575200	Weak transcription	Dnd41	blood
44	chr15:41572200-41575600	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr15:41572200-41575600	Weak transcription	Ovary	ovary
46	chr15:41572400-41575200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr15:41572400-41575200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr15:41572400-41575200	Weak transcription	Primary T cells fromperipheralblood	blood
49	chr15:41572400-41575200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr15:41572400-41575400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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