Variant report

Variant	rs16971832
Chromosome Location	chr15:41763919-41763920
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:41762256..41765173-chr15:41766010..41768467,3	K562	blood:
2	chr15:41760491..41765173-chr15:41766010..41771249,5	K562	blood:

Variant related genes	Relation type
ENSG00000137815	Chromatin interaction

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10152497	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10153010	0.83[ASN][1000 genomes]
rs10467974	1.00[CEU][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes]
rs10518718	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes]
rs11549913	0.80[EUR][1000 genomes]
rs11630191	0.83[ASN][1000 genomes]
rs11631770	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs11633799	0.91[JPT][hapmap]
rs12324291	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13379756	0.91[JPT][hapmap]
rs1655556	0.83[ASN][1000 genomes]
rs16971767	0.91[JPT][hapmap]
rs16971798	0.91[JPT][hapmap]
rs16971806	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16971834	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1757455	0.95[ASN][1000 genomes]
rs2015781	0.91[JPT][hapmap]
rs2777491	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs28393472	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28526381	0.91[JPT][hapmap]
rs28643296	0.80[EUR][1000 genomes]
rs28655070	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28847691	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs316605	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs316609	0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs316610	0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs316613	0.89[ASN][1000 genomes]
rs316614	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs316615	0.84[ASN][1000 genomes]
rs35826725	0.85[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs3743038	0.91[JPT][hapmap]
rs58335029	0.80[EUR][1000 genomes]
rs7163788	0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs7167498	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes]
rs7167729	0.84[ASN][1000 genomes]
rs7168177	0.85[ASN][1000 genomes]
rs7172148	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7175690	0.80[EUR][1000 genomes]
rs7175800	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs7176314	0.80[EUR][1000 genomes]
rs7176588	0.91[JPT][hapmap]
rs7177641	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs7178634	0.91[JPT][hapmap]
rs7178777	0.91[JPT][hapmap]
rs7180418	0.91[JPT][hapmap]
rs7180492	0.99[ASN][1000 genomes]
rs73404980	0.80[EUR][1000 genomes]
rs73404987	0.84[EUR][1000 genomes]
rs73404994	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73404995	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73404996	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73405000	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73405001	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73407109	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8023619	0.80[EUR][1000 genomes]
rs8026197	0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs8027626	0.84[ASN][1000 genomes]
rs8032838	0.91[JPT][hapmap]
rs8034819	0.87[ASN][1000 genomes]
rs8036498	0.91[JPT][hapmap]
rs8036527	0.95[ASN][1000 genomes]
rs8037824	0.83[ASN][1000 genomes]
rs8041325	0.91[JPT][hapmap]
rs823716	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs919961	0.91[JPT][hapmap]
rs9302109	0.91[JPT][hapmap]
rs9672866	0.85[EUR][1000 genomes]
rs9972547	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933757	chr15:41641236-41773058	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	27 gene(s)	inside rSNPs	diseases
2	nsv524476	chr15:41689232-41820200	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41719000-41765800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:41722000-41768400	Weak transcription	Small Intestine	intestine
3	chr15:41724200-41777200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:41729200-41773000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr15:41730000-41768400	Weak transcription	Psoas Muscle	Psoas
6	chr15:41730800-41769000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr15:41744000-41771800	Strong transcription	Fetal Intestine Small	intestine
8	chr15:41744200-41767400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr15:41745200-41766800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr15:41745200-41775800	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr15:41750600-41766200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr15:41750800-41767000	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr15:41753000-41775000	Strong transcription	Fetal Stomach	stomach
14	chr15:41753800-41764000	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr15:41753800-41776800	Strong transcription	Fetal Muscle Leg	muscle
16	chr15:41754000-41764800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr15:41754000-41774400	Strong transcription	Primary T helper cells fromperipheralblood	blood
18	chr15:41754200-41764000	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr15:41754200-41775200	Strong transcription	Primary T cells from cord blood	blood
20	chr15:41754200-41776000	Strong transcription	Cortex derived primary cultured neurospheres	brain
21	chr15:41754400-41764000	Strong transcription	HUES6 Cell Line	embryonic stem cell
22	chr15:41754400-41774600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr15:41754400-41775000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
24	chr15:41754400-41776800	Strong transcription	Placenta	Placenta
25	chr15:41754600-41764000	Strong transcription	HUES48 Cell Line	embryonic stem cell
26	chr15:41754600-41764000	Strong transcription	Adipose Nuclei	Adipose
27	chr15:41754600-41766800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr15:41755000-41769400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr15:41755000-41775600	Strong transcription	Primary monocytes fromperipheralblood	blood
30	chr15:41755400-41775200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr15:41756800-41764000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
32	chr15:41756800-41764000	Strong transcription	Dnd41	blood
33	chr15:41756800-41764000	Strong transcription	GM12878-XiMat	blood
34	chr15:41756800-41769000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr15:41756800-41776200	Strong transcription	Duodenum Smooth Muscle	Duodenum
36	chr15:41757000-41764000	Strong transcription	Rectal Mucosa Donor 29	rectum
37	chr15:41757000-41764200	Strong transcription	Primary T cells fromperipheralblood	blood
38	chr15:41757000-41764800	Strong transcription	Liver	Liver
39	chr15:41757000-41769000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr15:41757000-41774200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr15:41757000-41776200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr15:41757000-41776400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr15:41757200-41764200	Strong transcription	Ovary	ovary
44	chr15:41757200-41774400	Strong transcription	Fetal Brain Female	brain
45	chr15:41757200-41774600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr15:41757200-41775400	Strong transcription	Fetal Thymus	thymus
47	chr15:41757400-41774000	Strong transcription	Spleen	Spleen
48	chr15:41757400-41774200	Strong transcription	Thymus	Thymus
49	chr15:41757400-41776800	Strong transcription	Fetal Muscle Trunk	muscle
50	chr15:41758200-41768400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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