Variant report

Variant	rs11549913
Chromosome Location	chr15:41574050-41574051
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr15:41573303-41574092	SK-N-SH	brain:	n/a	chr15:41573688-41573699
2	GATA3	chr15:41573354-41574241	SK-N-SH	brain:	n/a	n/a
3	GATA3	chr15:41573423-41574135	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:41522897..41527944-chr15:41573906..41578128,9	K562	blood:
2	chr15:41573497..41577986-chr15:41624362..41627823,9	K562	blood:

Variant related genes	Relation type
OIP5-AS1	TF binding region
ENSG00000187446	Chromatin interaction
ENSG00000104147	Chromatin interaction
ENSG00000178997	Chromatin interaction
ENSG00000137804	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10152497	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10152702	0.93[ASN][1000 genomes]
rs10153010	0.83[ASN][1000 genomes]
rs10467974	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10518718	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11633799	0.91[ASN][1000 genomes]
rs11852609	0.84[ASN][1000 genomes]
rs11857631	0.90[ASN][1000 genomes]
rs12324291	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16952331	0.80[EUR][1000 genomes]
rs16971767	0.85[ASN][1000 genomes]
rs16971798	0.82[ASN][1000 genomes]
rs16971806	0.95[EUR][1000 genomes]
rs16971832	0.80[EUR][1000 genomes]
rs16971834	0.82[EUR][1000 genomes]
rs2015781	0.84[ASN][1000 genomes]
rs2412610	0.82[EUR][1000 genomes]
rs28393472	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28526381	0.85[ASN][1000 genomes]
rs28578057	0.85[ASN][1000 genomes]
rs28583065	0.85[ASN][1000 genomes]
rs28643296	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28655070	0.82[EUR][1000 genomes]
rs28716108	0.80[ASN][1000 genomes]
rs28847691	0.82[EUR][1000 genomes]
rs2899014	0.82[EUR][1000 genomes]
rs55782852	0.85[ASN][1000 genomes]
rs58335029	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58910172	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61037359	0.87[ASN][1000 genomes]
rs61127691	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6650519	0.88[ASN][1000 genomes]
rs7161772	0.85[ASN][1000 genomes]
rs7163649	0.87[ASN][1000 genomes]
rs7165675	0.85[ASN][1000 genomes]
rs7167498	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7172148	0.95[EUR][1000 genomes]
rs7175690	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7175800	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7176314	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7176505	0.88[ASN][1000 genomes]
rs7176588	0.87[ASN][1000 genomes]
rs7181560	0.80[ASN][1000 genomes]
rs7182667	0.80[ASN][1000 genomes]
rs7183337	0.91[AFR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73404980	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73404987	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73404994	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73404995	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73404996	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73405000	0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73405001	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73407109	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8023619	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8032838	0.85[ASN][1000 genomes]
rs8034626	0.83[ASN][1000 genomes]
rs8036498	0.85[ASN][1000 genomes]
rs919961	0.82[ASN][1000 genomes]
rs9302109	0.85[ASN][1000 genomes]
rs9672866	0.95[EUR][1000 genomes]
rs9972547	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045455	chr15:41536624-41620534	Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1044438	chr15:41560160-41745480	Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41524200-41575800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:41525200-41575400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr15:41525800-41575200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr15:41543000-41575200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr15:41549200-41575200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr15:41550400-41575600	Weak transcription	Fetal Brain Male	brain
7	chr15:41552400-41574600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr15:41552600-41575200	Weak transcription	GM12878-XiMat	blood
9	chr15:41552800-41575800	Weak transcription	Primary hematopoietic stem cells	blood
10	chr15:41556400-41574400	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr15:41556800-41575200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr15:41556800-41575200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr15:41556800-41575400	Weak transcription	Psoas Muscle	Psoas
14	chr15:41556800-41575800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr15:41556800-41575800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr15:41557000-41575400	Weak transcription	Fetal Heart	heart
17	chr15:41557200-41575200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr15:41557200-41575200	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr15:41559000-41575400	Weak transcription	Brain Germinal Matrix	brain
20	chr15:41563000-41575400	Weak transcription	Brain Hippocampus Middle	brain
21	chr15:41564000-41575400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr15:41564000-41575400	Weak transcription	HUVEC	blood vessel
23	chr15:41564200-41575200	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr15:41564200-41575400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr15:41564200-41576200	Weak transcription	Small Intestine	intestine
26	chr15:41569600-41575400	Weak transcription	Fetal Brain Female	brain
27	chr15:41569600-41575400	Weak transcription	Stomach Mucosa	stomach
28	chr15:41569600-41575600	Weak transcription	Fetal Kidney	kidney
29	chr15:41571000-41574800	Weak transcription	Primary B cells from peripheral blood	blood
30	chr15:41571800-41575200	Weak transcription	Fetal Intestine Small	intestine
31	chr15:41572000-41574800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr15:41572000-41575200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr15:41572000-41575400	Weak transcription	Fetal Lung	lung
34	chr15:41572000-41576200	Weak transcription	Spleen	Spleen
35	chr15:41572200-41575200	Weak transcription	Brain Substantia Nigra	brain
36	chr15:41572200-41575200	Weak transcription	Dnd41	blood
37	chr15:41572200-41575600	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr15:41572200-41575600	Weak transcription	Ovary	ovary
39	chr15:41572400-41575200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr15:41572400-41575200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr15:41572400-41575200	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr15:41572400-41575200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr15:41572400-41575400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr15:41572400-41575400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr15:41572600-41574800	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr15:41572600-41574800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr15:41572600-41574800	Weak transcription	Duodenum Mucosa	Duodenum
48	chr15:41572600-41574800	Weak transcription	K562	blood
49	chr15:41572600-41575200	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr15:41572600-41575200	Weak transcription	Primary B cells from cord blood	blood

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