Variant report

Variant	rs3743143
Chromosome Location	chr15:40750740-40750741
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:40749483..40752811-chr15:40761476..40764713,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169105	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12595577	1.00[CHB][hapmap]
rs2018127	1.00[MEX][hapmap]
rs2304644	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3743144	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34145	chr15:40549617-40889824	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40734800-40751000	Weak transcription	Aorta	Aorta
2	chr15:40738200-40751000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr15:40742400-40762200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr15:40744200-40756400	Weak transcription	Fetal Kidney	kidney
5	chr15:40745000-40751000	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr15:40745600-40751000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr15:40745800-40751000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr15:40745800-40751200	Weak transcription	Liver	Liver
9	chr15:40747400-40753000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr15:40747400-40762600	Weak transcription	HUVEC	blood vessel
11	chr15:40747600-40752400	Weak transcription	Primary hematopoietic stem cells	blood
12	chr15:40747800-40751400	Weak transcription	Brain Angular Gyrus	brain
13	chr15:40747800-40751800	Weak transcription	K562	blood
14	chr15:40748000-40751000	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr15:40748000-40751800	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr15:40748000-40757800	Weak transcription	NH-A	brain
17	chr15:40748200-40751200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr15:40748200-40751400	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr15:40748200-40755400	Weak transcription	Fetal Lung	lung
20	chr15:40748200-40755600	Weak transcription	Osteobl	bone
21	chr15:40748200-40755800	Weak transcription	NHDF-Ad	bronchial
22	chr15:40748800-40750800	Weak transcription	NHLF	lung
23	chr15:40748800-40757000	Weak transcription	A549	lung
24	chr15:40749000-40750800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr15:40749000-40750800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr15:40749000-40751800	Weak transcription	HSMMtube	muscle
27	chr15:40749000-40754000	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr15:40749000-40757400	Weak transcription	HSMM	muscle
29	chr15:40749200-40750800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr15:40749200-40750800	Weak transcription	Brain Hippocampus Middle	brain
31	chr15:40749200-40750800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr15:40749200-40751200	Weak transcription	Brain Substantia Nigra	brain
33	chr15:40749200-40751400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr15:40749200-40751400	Weak transcription	Brain Cingulate Gyrus	brain
35	chr15:40749200-40751400	Weak transcription	NHEK	skin
36	chr15:40749200-40751800	Weak transcription	Colon Smooth Muscle	Colon
37	chr15:40749200-40752000	Weak transcription	GM12878-XiMat	blood
38	chr15:40749200-40754400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr15:40749200-40758200	Weak transcription	Stomach Mucosa	stomach
40	chr15:40749200-40762600	Weak transcription	Psoas Muscle	Psoas
41	chr15:40749200-40762800	Weak transcription	Small Intestine	intestine
42	chr15:40749400-40750800	Weak transcription	Left Ventricle	heart
43	chr15:40749400-40751000	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr15:40749400-40751000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr15:40749400-40751000	Weak transcription	Pancreas	Pancrea
46	chr15:40749400-40751400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr15:40749400-40751800	Weak transcription	Brain Anterior Caudate	brain
48	chr15:40749400-40752600	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr15:40749400-40754600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr15:40749400-40754600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links