Variant report

Variant	rs3743144
Chromosome Location	chr15:40752134-40752135
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:40749483..40752811-chr15:40761476..40764713,3	MCF-7	breast:
2	chr15:40731258..40734131-chr15:40751966..40754614,2	MCF-7	breast:
3	chr15:40751111..40753930-chr15:40754038..40757377,4	K562	blood:
4	chr15:40751534..40754052-chr15:40756014..40757565,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000140320	Chromatin interaction
ENSG00000169105	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12912738	1.00[CEU][hapmap]
rs2304644	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3743143	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34145	chr15:40549617-40889824	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40742400-40762200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr15:40744200-40756400	Weak transcription	Fetal Kidney	kidney
3	chr15:40747400-40753000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:40747400-40762600	Weak transcription	HUVEC	blood vessel
5	chr15:40747600-40752400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr15:40748000-40757800	Weak transcription	NH-A	brain
7	chr15:40748200-40755400	Weak transcription	Fetal Lung	lung
8	chr15:40748200-40755600	Weak transcription	Osteobl	bone
9	chr15:40748200-40755800	Weak transcription	NHDF-Ad	bronchial
10	chr15:40748800-40757000	Weak transcription	A549	lung
11	chr15:40749000-40754000	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr15:40749000-40757400	Weak transcription	HSMM	muscle
13	chr15:40749200-40754400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr15:40749200-40758200	Weak transcription	Stomach Mucosa	stomach
15	chr15:40749200-40762600	Weak transcription	Psoas Muscle	Psoas
16	chr15:40749200-40762800	Weak transcription	Small Intestine	intestine
17	chr15:40749400-40752600	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr15:40749400-40754600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr15:40749400-40754600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr15:40749400-40754600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr15:40749400-40758600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr15:40749400-40762200	Weak transcription	Fetal Heart	heart
23	chr15:40749400-40762400	Weak transcription	Right Atrium	heart
24	chr15:40749600-40757200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr15:40749600-40757800	Weak transcription	HMEC	breast
26	chr15:40749800-40756200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr15:40749800-40760800	Strong transcription	Spleen	Spleen
28	chr15:40749800-40762200	Weak transcription	Fetal Brain Male	brain
29	chr15:40750000-40761400	Strong transcription	Fetal Intestine Small	intestine
30	chr15:40750200-40752600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr15:40750200-40759400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr15:40750200-40759600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr15:40750200-40759800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
34	chr15:40750200-40760800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr15:40750200-40761000	Strong transcription	HUES6 Cell Line	embryonic stem cell
36	chr15:40750400-40752200	Strong transcription	Stomach Smooth Muscle	stomach
37	chr15:40750400-40753000	Genic enhancers	Primary T cells fromperipheralblood	blood
38	chr15:40750400-40753000	Strong transcription	Rectal Mucosa Donor 31	rectum
39	chr15:40750400-40753400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr15:40750400-40754800	Strong transcription	Skeletal Muscle Male	skeletal muscle
41	chr15:40750400-40755200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr15:40750400-40756200	Strong transcription	Placenta	Placenta
43	chr15:40750400-40758400	Strong transcription	Primary monocytes fromperipheralblood	blood
44	chr15:40750400-40758400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr15:40750400-40759600	Strong transcription	Primary B cells from peripheral blood	blood
46	chr15:40750400-40759600	Strong transcription	Gastric	stomach
47	chr15:40750400-40759600	Strong transcription	Ovary	ovary
48	chr15:40750400-40759600	Strong transcription	Rectal Mucosa Donor 29	rectum
49	chr15:40750400-40759600	Strong transcription	Dnd41	blood
50	chr15:40750400-40759800	Strong transcription	Brain Germinal Matrix	brain

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