Variant report

Variant	rs2304644
Chromosome Location	chr15:40745594-40745595
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:40674267..40676664-chr15:40743987..40746424,2	MCF-7	breast:
2	chr15:40743916..40746207-chr15:40767844..40769362,2	K562	blood:
3	chr15:40744227..40745769-chr15:40750283..40752518,2	K562	blood:
4	chr15:40743208..40745711-chr15:40766264..40768804,2	MCF-7	breast:
5	chr15:40732284..40734448-chr15:40743962..40746615,2	MCF-7	breast:
6	chr15:40738374..40740268-chr15:40744165..40746234,2	MCF-7	breast:
7	chr15:40744169..40746104-chr15:40756811..40759374,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000140320	Chromatin interaction
ENSG00000128944	Chromatin interaction
ENSG00000259211	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12912738	1.00[CEU][hapmap]
rs3743137	1.00[ASW][hapmap]
rs3743143	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3743144	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34145	chr15:40549617-40889824	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	esv3428108	chr15:40744855-40746413	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40734800-40746400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr15:40734800-40747000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr15:40734800-40751000	Weak transcription	Aorta	Aorta
4	chr15:40735000-40746600	Weak transcription	HSMM	muscle
5	chr15:40735200-40747800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr15:40736800-40748600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr15:40738000-40750400	Weak transcription	Brain Germinal Matrix	brain
8	chr15:40738200-40746600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr15:40738200-40746800	Weak transcription	Adipose Nuclei	Adipose
10	chr15:40738200-40747000	Weak transcription	Fetal Muscle Leg	muscle
11	chr15:40738200-40751000	Weak transcription	Rectal Smooth Muscle	rectum
12	chr15:40738400-40746800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr15:40738400-40747000	Weak transcription	Colon Smooth Muscle	Colon
14	chr15:40738400-40747200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr15:40738600-40746000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr15:40738600-40746200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr15:40738600-40746400	Weak transcription	NHEK	skin
18	chr15:40738600-40746800	Weak transcription	NHLF	lung
19	chr15:40738800-40746800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr15:40740600-40745600	Enhancers	Primary T cells fromperipheralblood	blood
21	chr15:40740600-40749600	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr15:40741200-40747800	Enhancers	K562	blood
23	chr15:40741400-40746400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr15:40741600-40746600	Weak transcription	A549	lung
25	chr15:40741800-40745600	Weak transcription	HMEC	breast
26	chr15:40741800-40746000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr15:40741800-40746200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr15:40741800-40746200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr15:40741800-40746600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr15:40741800-40746600	Weak transcription	NH-A	brain
31	chr15:40741800-40746600	Weak transcription	NHDF-Ad	bronchial
32	chr15:40741800-40746600	Weak transcription	Osteobl	bone
33	chr15:40742000-40745800	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr15:40742200-40745600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr15:40742200-40745600	Enhancers	Left Ventricle	heart
36	chr15:40742200-40746000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
37	chr15:40742200-40747800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr15:40742200-40749200	Enhancers	Sigmoid Colon	Sigmoid Colon
39	chr15:40742200-40749600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
40	chr15:40742400-40746000	Enhancers	iPS-15b Cell Line	embryonic stem cell
41	chr15:40742400-40762200	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr15:40742600-40747000	Enhancers	Dnd41	blood
43	chr15:40742600-40749400	Enhancers	HUES6 Cell Line	embryonic stem cell
44	chr15:40742600-40750000	Enhancers	Fetal Intestine Large	intestine
45	chr15:40742800-40745600	Enhancers	ES-I3 Cell Line	embryonic stem cell
46	chr15:40742800-40746600	Weak transcription	Fetal Stomach	stomach
47	chr15:40742800-40746600	Weak transcription	Psoas Muscle	Psoas
48	chr15:40742800-40749600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
49	chr15:40742800-40750000	Enhancers	H1 Cell Line	embryonic stem cell
50	chr15:40743000-40746600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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