Variant report

Variant	rs3743198
Chromosome Location	chr15:79273985-79273986
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:79266861..79270074-chr15:79272087..79274367,3	K562	blood:
2	chr15:79164464..79167320-chr15:79273608..79277179,4	K562	blood:
3	chr15:79272849..79274455-chr15:79275680..79277693,2	K562	blood:
4	chr15:79242855..79244395-chr15:79271553..79274104,2	MCF-7	breast:
5	chr15:79272649..79275133-chr15:79307482..79309069,2	MCF-7	breast:
6	chr15:79264746..79267610-chr15:79273645..79276620,3	K562	blood:
7	chr15:79271517..79274349-chr15:79274954..79277693,2	K562	blood:
8	chr15:79268574..79270778-chr15:79272295..79274532,2	K562	blood:
9	chr15:79235640..79237951-chr15:79272936..79275463,2	MCF-7	breast:
10	chr15:79165092..79167959-chr15:79271269..79275481,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000103811	Chromatin interaction
ENSG00000058335	Chromatin interaction
ENSG00000185787	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs2230518	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2278650	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs28566661	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28774671	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3743196	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3743197	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3743200	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3743201	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3784533	0.83[JPT][hapmap]
rs3803544	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3825928	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56057581	0.81[EUR][1000 genomes]
rs56060107	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56378114	0.81[EUR][1000 genomes]
rs6495356	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7167720	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7167721	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7167730	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7168964	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7173329	0.95[CEU][hapmap];0.91[EUR][1000 genomes]
rs7174399	0.80[YRI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7175590	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7175835	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8026309	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8026710	0.81[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8033417	0.95[CEU][hapmap];0.90[EUR][1000 genomes]
rs8036107	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs894783	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33573	chr15:79053484-79293881	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv904433	chr15:79243571-79310288	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79244000-79288000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr15:79261200-79280400	Weak transcription	Esophagus	oesophagus
3	chr15:79270000-79278400	Weak transcription	Fetal Intestine Small	intestine
4	chr15:79270400-79274400	Weak transcription	HSMMtube	muscle
5	chr15:79270800-79274000	Enhancers	Fetal Muscle Trunk	muscle
6	chr15:79271400-79275600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr15:79271600-79275800	Weak transcription	Lung	lung
8	chr15:79272200-79274800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr15:79272200-79275200	Weak transcription	HSMM	muscle
10	chr15:79272200-79275600	Weak transcription	Brain Angular Gyrus	brain
11	chr15:79272200-79275600	Weak transcription	Right Ventricle	heart
12	chr15:79272200-79275800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr15:79272200-79275800	Weak transcription	Placenta	Placenta
14	chr15:79272200-79275800	Weak transcription	Right Atrium	heart
15	chr15:79272200-79276000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr15:79272200-79276000	Weak transcription	Brain Cingulate Gyrus	brain
17	chr15:79272200-79276200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr15:79272200-79280000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr15:79272200-79280000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr15:79272200-79280200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr15:79272200-79280200	Weak transcription	Pancreas	Pancrea
22	chr15:79272200-79280400	Weak transcription	Brain Substantia Nigra	brain
23	chr15:79272200-79280600	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr15:79272200-79284400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr15:79272400-79274000	Weak transcription	Adipose Nuclei	Adipose
26	chr15:79272400-79275000	Weak transcription	HepG2	liver
27	chr15:79272400-79275400	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr15:79272400-79275400	Weak transcription	Spleen	Spleen
29	chr15:79272400-79275800	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr15:79272400-79279600	Weak transcription	Fetal Intestine Large	intestine
31	chr15:79272400-79280200	Weak transcription	Brain Hippocampus Middle	brain
32	chr15:79272400-79286400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr15:79272600-79280000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr15:79273000-79274400	ZNF genes & repeats	GM12878-XiMat	blood
35	chr15:79273000-79275200	Enhancers	Primary hematopoietic stem cells short term culture	blood
36	chr15:79273200-79274000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr15:79273400-79274000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr15:79273600-79274200	Enhancers	K562	blood
39	chr15:79273600-79276400	Enhancers	Primary monocytes fromperipheralblood	blood
40	chr15:79273800-79274200	Weak transcription	Fetal Muscle Leg	muscle
41	chr15:79273800-79274200	Weak transcription	Monocytes-CD14+_RO01746	blood

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