Variant report

Variant	rs7175835
Chromosome Location	chr15:79266998-79266999
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:79264133..79265722-chr15:79266216..79269027,2	MCF-7	breast:
2	chr15:79265663..79267693-chr15:79269645..79272291,2	MCF-7	breast:
3	chr15:79266861..79270074-chr15:79272087..79274367,3	K562	blood:
4	chr15:79264746..79267610-chr15:79273645..79276620,3	K562	blood:
5	chr15:79265663..79268823-chr15:79268915..79271641,3	K562	blood:
6	chr15:79264746..79267610-chr15:79274625..79276620,2	K562	blood:
7	chr15:79258673..79264077-chr15:79264289..79268507,6	K562	blood:

Variant related genes	Relation type
ENSG00000058335	Chromatin interaction
ENSG00000177699	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs2230518	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2278650	1.00[CEU][hapmap]
rs28566661	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28758422	1.00[ASN][1000 genomes]
rs28774671	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3743196	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3743197	0.85[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3743198	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3743200	0.85[CEU][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3743201	0.85[CEU][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3803544	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3825928	0.82[CEU][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56060107	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6495356	0.81[CEU][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7168964	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7173329	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs7174399	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7175590	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8026309	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8026710	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8033417	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs8036107	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33573	chr15:79053484-79293881	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv904433	chr15:79243571-79310288	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79244000-79288000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr15:79261200-79280400	Weak transcription	Esophagus	oesophagus
3	chr15:79262600-79269000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr15:79263600-79269000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr15:79263600-79271200	Weak transcription	Lung	lung
6	chr15:79263800-79271200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr15:79264000-79268800	Weak transcription	Brain Substantia Nigra	brain
8	chr15:79264000-79271400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr15:79264200-79269600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr15:79264200-79269800	Weak transcription	Brain Cingulate Gyrus	brain
11	chr15:79264200-79269800	Weak transcription	Brain Hippocampus Middle	brain
12	chr15:79264200-79271400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr15:79264200-79271800	Weak transcription	Brain Angular Gyrus	brain
14	chr15:79264400-79269200	Weak transcription	HepG2	liver
15	chr15:79265800-79271000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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