Variant report

Variant	rs8026710
Chromosome Location	chr15:79268798-79268799
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:79268732-79273709	GM12891	blood:	n/a	n/a
2	MTA3	chr15:79268702-79270639	GM12878	blood:	n/a	n/a
3	PAX5	chr15:79268797-79270450	GM12878	blood:	n/a	chr15:79269545-79269554
4	POLR2A	chr15:79268749-79270549	GM12892	blood:	n/a	n/a
5	RELA	chr15:79268795-79270520	GM10847	blood:	n/a	chr15:79269796-79269805 chr15:79269796-79269805
6	YY1	chr15:79268792-79269931	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:79264133..79265722-chr15:79266216..79269027,2	MCF-7	breast:
2	chr15:79266861..79270074-chr15:79272087..79274367,3	K562	blood:
3	chr1:145380838..145382385-chr15:79267640..79269976,2	MCF-7	breast:
4	chr15:79267805..79270419-chr15:79279866..79282392,3	MCF-7	breast:
5	chr15:79265663..79268823-chr15:79268915..79271641,3	K562	blood:
6	chr15:79268574..79270778-chr15:79272295..79274532,2	K562	blood:

Variant related genes	Relation type
ENSG00000177699	TF binding region
ENSG00000177699	Chromatin interaction
ENSG00000058335	Chromatin interaction
ENSG00000233396	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs2230518	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2278650	0.81[CEU][hapmap]
rs28566661	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28758422	1.00[ASN][1000 genomes]
rs28774671	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3743196	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3743197	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3743198	0.81[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3743200	1.00[CEU][hapmap];0.80[YRI][hapmap];0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3743201	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3803544	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3825928	1.00[CEU][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56060107	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6495356	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7168964	0.84[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7173329	0.82[EUR][1000 genomes]
rs7174399	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7175590	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7175835	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8026309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8036107	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33573	chr15:79053484-79293881	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv904433	chr15:79243571-79310288	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79244000-79288000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr15:79261200-79280400	Weak transcription	Esophagus	oesophagus
3	chr15:79262600-79269000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr15:79263600-79269000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr15:79263600-79271200	Weak transcription	Lung	lung
6	chr15:79263800-79271200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr15:79264000-79268800	Weak transcription	Brain Substantia Nigra	brain
8	chr15:79264000-79271400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr15:79264200-79269600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr15:79264200-79269800	Weak transcription	Brain Cingulate Gyrus	brain
11	chr15:79264200-79269800	Weak transcription	Brain Hippocampus Middle	brain
12	chr15:79264200-79271400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr15:79264200-79271800	Weak transcription	Brain Angular Gyrus	brain
14	chr15:79264400-79269200	Weak transcription	HepG2	liver
15	chr15:79265800-79271000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr15:79267600-79268800	Weak transcription	Fetal Muscle Leg	muscle
17	chr15:79268000-79269000	Enhancers	GM12878-XiMat	blood
18	chr15:79268200-79269000	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr15:79268200-79272400	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr15:79268400-79272600	Enhancers	Primary hematopoietic stem cells short term culture	blood

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