Variant report

Variant	rs3749475
Chromosome Location	chr4:122821162-122821163
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:122821031..122822144-chr4:123139638..123140511,4	MCF-7	breast:
2	chr4:122821019..122822306-chr4:122923760..122925157,6	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1051881	1.00[CEU][hapmap]
rs12644087	0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1507987	0.88[CHB][hapmap];0.85[CHD][hapmap]
rs1507988	0.86[CHB][hapmap]
rs1803183	1.00[CEU][hapmap]
rs2661556	0.88[CHB][hapmap]
rs2706794	0.88[CHB][hapmap];0.84[CHD][hapmap]
rs2706797	0.88[CHB][hapmap];0.81[CHD][hapmap]
rs3217767	1.00[CEU][hapmap]
rs3762839	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.88[MKK][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs3805159	0.99[ASN][1000 genomes]
rs4001033	0.86[CHB][hapmap]
rs55685419	0.83[EUR][1000 genomes]
rs56300111	0.83[EUR][1000 genomes]
rs57779372	0.83[EUR][1000 genomes]
rs60240575	0.83[EUR][1000 genomes]
rs6830453	1.00[CEU][hapmap]
rs6836544	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs6838343	0.83[EUR][1000 genomes]
rs6854295	1.00[CEU][hapmap]
rs72919937	0.99[ASN][1000 genomes]
rs73844292	0.83[EUR][1000 genomes]
rs73844298	0.83[EUR][1000 genomes]
rs73847203	0.83[EUR][1000 genomes]
rs73847206	0.83[EUR][1000 genomes]
rs769240	0.88[CHB][hapmap];0.85[CHD][hapmap]
rs769243	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs769245	1.00[CEU][hapmap]
rs7694815	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817261	chr4:122085173-123020068	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv997539	chr4:122544104-123274266	Genic enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv530157	chr4:122557302-123248756	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv1803127	chr4:122806228-122830334	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1014729	chr4:122806228-122848966	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:122813400-122860600	Weak transcription	Fetal Lung	lung
2	chr4:122819600-122821200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr4:122819800-122821400	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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