Variant report

Variant	rs57779372
Chromosome Location	chr4:122778337-122778338
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1051881	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1803183	1.00[ASN][1000 genomes]
rs3217767	1.00[ASN][1000 genomes]
rs3749475	0.83[EUR][1000 genomes]
rs4077754	1.00[ASN][1000 genomes]
rs55685419	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55803709	1.00[ASN][1000 genomes]
rs55936221	1.00[ASN][1000 genomes]
rs56030020	1.00[ASN][1000 genomes]
rs56221685	1.00[ASN][1000 genomes]
rs56300111	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56370449	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs58745264	1.00[ASN][1000 genomes]
rs58921436	0.90[ASN][1000 genomes]
rs59268194	1.00[ASN][1000 genomes]
rs60240575	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61180375	1.00[ASN][1000 genomes]
rs61434837	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61665948	1.00[ASN][1000 genomes]
rs6823340	1.00[ASN][1000 genomes]
rs6825926	1.00[ASN][1000 genomes]
rs6830453	1.00[ASN][1000 genomes]
rs6836544	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6838343	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6854295	1.00[ASN][1000 genomes]
rs6858061	1.00[ASN][1000 genomes]
rs73844293	1.00[ASN][1000 genomes]
rs73844294	1.00[ASN][1000 genomes]
rs73844297	1.00[ASN][1000 genomes]
rs73844298	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73847203	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73847204	1.00[ASN][1000 genomes]
rs73847205	0.91[ASN][1000 genomes]
rs73847206	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7684547	0.83[ASN][1000 genomes]
rs769243	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7694815	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817261	chr4:122085173-123020068	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv997539	chr4:122544104-123274266	Genic enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv530157	chr4:122557302-123248756	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:122745400-122790400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr4:122745400-122790600	Weak transcription	Small Intestine	intestine
3	chr4:122745600-122781600	Weak transcription	Placenta	Placenta
4	chr4:122745600-122790400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr4:122745600-122790600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr4:122745600-122790800	Weak transcription	Psoas Muscle	Psoas
7	chr4:122745800-122779200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr4:122745800-122781200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr4:122745800-122786800	Weak transcription	A549	lung
10	chr4:122745800-122790200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr4:122745800-122790400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr4:122745800-122790400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr4:122745800-122790400	Weak transcription	Rectal Smooth Muscle	rectum
14	chr4:122745800-122790800	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr4:122751400-122789800	Weak transcription	NHEK	skin
16	chr4:122751400-122790400	Weak transcription	Primary B cells from cord blood	blood
17	chr4:122751600-122790200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr4:122754600-122790000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr4:122755400-122790800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr4:122757600-122790200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr4:122758000-122790000	Weak transcription	HepG2	liver
22	chr4:122760600-122791000	Weak transcription	Spleen	Spleen
23	chr4:122761000-122785000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr4:122761200-122785000	Weak transcription	K562	blood
25	chr4:122761800-122781400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr4:122762800-122790200	Weak transcription	Brain Substantia Nigra	brain
27	chr4:122764600-122790600	Weak transcription	Colonic Mucosa	Colon
28	chr4:122765000-122781200	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr4:122765000-122781400	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr4:122767400-122781400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr4:122768000-122781400	Weak transcription	Primary hematopoietic stem cells	blood
32	chr4:122768000-122781800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr4:122768000-122787000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr4:122768000-122790000	Weak transcription	Fetal Brain Male	brain
35	chr4:122768000-122790600	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr4:122768000-122790600	Weak transcription	Right Ventricle	heart
37	chr4:122768200-122778800	Weak transcription	Primary T cells from cord blood	blood
38	chr4:122768200-122779200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr4:122768200-122779200	Weak transcription	HSMM	muscle
40	chr4:122768200-122779400	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr4:122768200-122780200	Weak transcription	HUVEC	blood vessel
42	chr4:122768200-122783800	Weak transcription	Pancreas	Pancrea
43	chr4:122768200-122790200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr4:122768200-122790600	Weak transcription	Esophagus	oesophagus
45	chr4:122768200-122790600	Weak transcription	HSMMtube	muscle
46	chr4:122768200-122790800	Weak transcription	Aorta	Aorta
47	chr4:122768200-122790800	Weak transcription	Gastric	stomach
48	chr4:122768400-122781800	Weak transcription	Liver	Liver
49	chr4:122768600-122781400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr4:122768800-122779400	Weak transcription	Monocytes-CD14+_RO01746	blood

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