Variant report

Variant	rs6838343
Chromosome Location	chr4:122794968-122794969
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:17)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:17 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF384	chr4:122794911-122795121	K562	blood:	n/a	n/a
2	EBF1	chr4:122794776-122795060	GM12878	blood:	n/a	n/a
3	NFYB	chr4:122794799-122794983	GM12878	blood:	n/a	n/a
4	SP1	chr4:122794731-122795016	GM12878	blood:	n/a	n/a
5	RCOR1	chr4:122794826-122795115	K562	blood:	n/a	n/a
6	TBL1XR1	chr4:122794908-122795090	K562	blood:	n/a	n/a
7	TEAD4	chr4:122794743-122795180	K562	blood:	n/a	n/a
8	NR2F2	chr4:122794705-122795243	K562	blood:	n/a	n/a
9	EP300	chr4:122794771-122795032	GM12878	blood:	n/a	n/a
10	CCNT2	chr4:122794796-122794996	K562	blood:	n/a	n/a
11	CHD2	chr4:122794741-122794991	GM12878	blood:	n/a	n/a
12	EP300	chr4:122794718-122794971	GM12878	blood:	n/a	n/a
13	EP300	chr4:122794709-122795033	GM12878	blood:	n/a	n/a
14	JUND	chr4:122794863-122795033	K562	blood:	n/a	n/a
15	BHLHE40	chr4:122794933-122795079	K562	blood:	n/a	n/a
16	TEAD4	chr4:122794818-122795135	K562	blood:	n/a	n/a
17	NR2F2	chr4:122794801-122795099	K562	blood:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:122744717..122747414-chr4:122794817..122796838,3	K562	blood:

No data

No data

No data

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1051881	0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3749475	0.83[EUR][1000 genomes]
rs55685419	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56300111	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56370449	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs57779372	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60240575	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61434837	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6836544	0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73844298	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73847203	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73847206	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs769243	0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7694815	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817261	chr4:122085173-123020068	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv997539	chr4:122544104-123274266	Genic enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv530157	chr4:122557302-123248756	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:122792000-122795000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr4:122792200-122796800	Weak transcription	NH-A	brain
3	chr4:122792200-122798200	Weak transcription	HUVEC	blood vessel
4	chr4:122792400-122802000	Weak transcription	Fetal Lung	lung
5	chr4:122794000-122795600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr4:122794200-122795400	Enhancers	NHDF-Ad	bronchial
7	chr4:122794200-122796000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr4:122794400-122795000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr4:122794400-122795800	Enhancers	K562	blood
10	chr4:122794600-122795000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr4:122794800-122795200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr4:122794800-122796200	Enhancers	Primary hematopoietic stem cells	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links