Variant report

Variant	rs375157251
Chromosome Location	chr19:36210665-36210666
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:36207787..36211113-chr19:36265053..36268029,3	K562	blood:
2	chr19:36208210..36211144-chr19:36264877..36267691,4	MCF-7	breast:
3	chr19:36207151..36210695-chr19:36264649..36268718,5	K562	blood:
4	chr19:36203511..36205032-chr19:36208383..36210782,2	MCF-7	breast:
5	chr19:36206099..36210841-chr19:36246614..36251827,8	MCF-7	breast:
6	chr19:36207379..36214815-chr19:36234227..36241330,25	MCF-7	breast:
7	chr19:36205476..36213390-chr19:36226310..36233646,27	MCF-7	breast:

Variant related genes	Relation type
ENSG00000167595	Chromatin interaction
ENSG00000011590	Chromatin interaction
ENSG00000161265	Chromatin interaction
ENSG00000205155	Chromatin interaction
ENSG00000004777	Chromatin interaction
ENSG00000004776	Chromatin interaction
ENSG00000267796	Chromatin interaction
ENSG00000105663	Chromatin interaction
ENSG00000267120	Chromatin interaction
ENSG00000126246	Chromatin interaction
ENSG00000188223	Chromatin interaction
ENSG00000267439	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv911630	chr19:36149761-36290977	Enhancers Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	69 gene(s)	inside rSNPs	diseases
3	nsv458566	chr19:36156588-36265508	Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
4	nsv579422	chr19:36156588-36265508	Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
5	nsv911631	chr19:36169285-36290977	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
6	nsv911632	chr19:36174176-36288297	Strong transcription Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
7	nsv911633	chr19:36206050-36283847	Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	61 gene(s)	inside rSNPs	diseases
8	nsv911634	chr19:36206050-36290977	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	61 gene(s)	inside rSNPs	diseases
9	nsv828544	chr19:36207191-36210758	Flanking Active TSS Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	36 gene(s)	inside rSNPs	diseases
10	nsv543996	chr19:36210269-36265431	Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
11	nsv1057830	chr19:36210269-36279794	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
12	nsv543997	chr19:36210269-36279794	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36209600-36210800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr19:36210000-36210800	Genic enhancers	Primary B cells from peripheral blood	blood
3	chr19:36210000-36210800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr19:36210000-36210800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr19:36210000-36210800	Transcr. at gene 5' and 3'	Fetal Intestine Small	intestine
6	chr19:36210000-36210800	Enhancers	Stomach Mucosa	stomach
7	chr19:36210000-36211200	Transcr. at gene 5' and 3'	Dnd41	blood
8	chr19:36210000-36211400	Weak transcription	Aorta	Aorta
9	chr19:36210000-36212800	Genic enhancers	Spleen	Spleen
10	chr19:36210200-36210800	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr19:36210200-36210800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr19:36210200-36210800	Enhancers	Primary T cells fromperipheralblood	blood
13	chr19:36210200-36210800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr19:36210200-36210800	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr19:36210200-36210800	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr19:36210200-36210800	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr19:36210200-36210800	Enhancers	Brain Angular Gyrus	brain
18	chr19:36210200-36210800	Genic enhancers	Brain Hippocampus Middle	brain
19	chr19:36210200-36210800	Genic enhancers	Gastric	stomach
20	chr19:36210200-36210800	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr19:36210200-36210800	Enhancers	Small Intestine	intestine
22	chr19:36210200-36210800	Genic enhancers	Thymus	Thymus
23	chr19:36210200-36211000	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr19:36210200-36211000	Enhancers	Fetal Heart	heart
25	chr19:36210200-36211000	Genic enhancers	Fetal Muscle Leg	muscle
26	chr19:36210200-36211000	Weak transcription	Left Ventricle	heart
27	chr19:36210200-36211000	Genic enhancers	Lung	lung
28	chr19:36210200-36211200	Genic enhancers	Fetal Stomach	stomach
29	chr19:36210200-36211400	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr19:36210200-36211800	Genic enhancers	Placenta	Placenta
31	chr19:36210200-36212400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr19:36210400-36210800	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
33	chr19:36210400-36210800	Transcr. at gene 5' and 3'	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr19:36210400-36210800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr19:36210400-36210800	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells short term culture	blood
36	chr19:36210400-36210800	Genic enhancers	Brain Dorsolateral Prefrontal Cortex	brain
37	chr19:36210400-36210800	Weak transcription	Colonic Mucosa	Colon
38	chr19:36210400-36210800	Genic enhancers	Fetal Intestine Large	intestine
39	chr19:36210400-36210800	Genic enhancers	Fetal Muscle Trunk	muscle
40	chr19:36210400-36210800	Genic enhancers	Fetal Thymus	thymus
41	chr19:36210400-36210800	Genic enhancers	Right Ventricle	heart
42	chr19:36210400-36210800	Genic enhancers	NHEK	skin
43	chr19:36210400-36210800	Enhancers	Osteobl	bone
44	chr19:36210400-36211000	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr19:36210400-36211000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr19:36210400-36211000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr19:36210400-36211000	Enhancers	Primary hematopoietic stem cells	blood
48	chr19:36210400-36211000	Enhancers	Primary T helper cells PMA-I stimulated	--
49	chr19:36210400-36211000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
50	chr19:36210400-36211000	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin

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