The 2.0 version of rSNPBase

Variant report

Variant rs3753293
Chromosome Location chr1:169102690-169102691
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:89 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:169079800-169105800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
2 chr1:169086600-169103200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
3 chr1:169086600-169103400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
4 chr1:169089600-169103400 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
5 chr1:169090000-169103800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
6 chr1:169090400-169103200 Strong transcription Sigmoid Colon Sigmoid Colon
7 chr1:169091000-169102800 Strong transcription Hela-S3 cervix
8 chr1:169091200-169124600 Weak transcription NHLF lung
9 chr1:169091400-169103200 Strong transcription Liver Liver
10 chr1:169091400-169103400 Strong transcription Duodenum Mucosa Duodenum
11 chr1:169091600-169110000 Weak transcription Spleen Spleen
12 chr1:169091600-169120400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
13 chr1:169091600-169120600 Weak transcription Lung lung
14 chr1:169091800-169104200 Strong transcription Rectal Mucosa Donor 31 rectum
15 chr1:169091800-169137600 Weak transcription Esophagus oesophagus
16 chr1:169092400-169106200 Weak transcription Gastric stomach
17 chr1:169092600-169103600 Strong transcription Rectal Mucosa Donor 29 rectum
18 chr1:169093200-169103200 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
19 chr1:169093400-169102800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
20 chr1:169094600-169104000 Genic enhancers Brain Hippocampus Middle brain
21 chr1:169095000-169112600 Weak transcription Stomach Mucosa stomach
22 chr1:169095800-169106200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
23 chr1:169096600-169137400 Weak transcription Fetal Stomach stomach
24 chr1:169096800-169108600 Weak transcription Primary T regulatory cells fromperipheralblood blood
25 chr1:169097000-169130000 Weak transcription Ovary ovary
26 chr1:169097600-169108200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
27 chr1:169098200-169103400 Weak transcription Fetal Brain Male brain
28 chr1:169098200-169105000 Weak transcription Right Ventricle heart
29 chr1:169098800-169112200 Weak transcription HSMM muscle
30 chr1:169099000-169105000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
31 chr1:169099400-169103400 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
32 chr1:169099400-169103400 Weak transcription Placenta Placenta
33 chr1:169099400-169103600 Weak transcription HSMMtube muscle
34 chr1:169099400-169110400 Weak transcription Osteobl bone
35 chr1:169099400-169111200 Weak transcription Aorta Aorta
36 chr1:169099400-169112000 Weak transcription Psoas Muscle Psoas
37 chr1:169099600-169103000 Weak transcription Colon Smooth Muscle Colon
38 chr1:169100000-169102800 Strong transcription Stomach Smooth Muscle stomach
39 chr1:169100000-169108600 Weak transcription Fetal Intestine Small intestine
40 chr1:169100800-169103400 Weak transcription NH-A brain
41 chr1:169100800-169103600 Weak transcription Fetal Muscle Trunk muscle
42 chr1:169100800-169104600 Weak transcription Primary hematopoietic stem cells blood
43 chr1:169100800-169115000 Weak transcription Small Intestine intestine
44 chr1:169100800-169116200 Weak transcription Fetal Kidney kidney
45 chr1:169100800-169141400 Weak transcription Fetal Muscle Leg muscle
46 chr1:169101000-169103200 Weak transcription Fetal Lung lung
47 chr1:169101000-169105400 Weak transcription Colonic Mucosa Colon
48 chr1:169101000-169113800 Weak transcription Skeletal Muscle Male skeletal muscle
49 chr1:169101000-169137000 Weak transcription Primary T cells from cord blood blood
50 chr1:169101200-169102800 Weak transcription Fetal Heart heart

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Last update: Aug 31, 2015