The 2.0 version of rSNPBase

Variant report

Variant rs3754401
Chromosome Location chr1:226873270-226873271
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:95 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:226865600-226878000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
2 chr1:226866400-226874800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
3 chr1:226866800-226874200 Weak transcription Sigmoid Colon Sigmoid Colon
4 chr1:226867800-226874200 Enhancers Primary T helper memory cells from peripheral blood 1 blood
5 chr1:226868000-226876000 Enhancers Primary T killer naive cells fromperipheralblood blood
6 chr1:226868200-226873400 Enhancers Primary T helper naive cells from peripheral blood blood
7 chr1:226868200-226877400 Enhancers Left Ventricle heart
8 chr1:226868200-226884600 Enhancers Brain Substantia Nigra brain
9 chr1:226868400-226874200 Enhancers Primary neutrophils fromperipheralblood blood
10 chr1:226868400-226876000 Enhancers Brain Inferior Temporal Lobe brain
11 chr1:226868400-226876800 Genic enhancers Fetal Thymus thymus
12 chr1:226868400-226876800 Genic enhancers Thymus Thymus
13 chr1:226868400-226877400 Enhancers Psoas Muscle Psoas
14 chr1:226868400-226880600 Enhancers Brain Anterior Caudate brain
15 chr1:226868400-226881200 Enhancers Skeletal Muscle Male skeletal muscle
16 chr1:226868400-226881400 Enhancers Brain Angular Gyrus brain
17 chr1:226868400-226881800 Enhancers Fetal Muscle Leg muscle
18 chr1:226868600-226874400 Weak transcription Brain Germinal Matrix brain
19 chr1:226868600-226874600 Weak transcription Fetal Intestine Large intestine
20 chr1:226868600-226874600 Enhancers Rectal Smooth Muscle rectum
21 chr1:226868600-226875800 Enhancers Brain Hippocampus Middle brain
22 chr1:226868600-226876400 Enhancers Brain Dorsolateral Prefrontal Cortex brain
23 chr1:226868600-226877200 Enhancers Skeletal Muscle Female skeletal muscle
24 chr1:226868600-226878000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
25 chr1:226868600-226881200 Enhancers Adipose Nuclei Adipose
26 chr1:226868600-226884800 Weak transcription Fetal Kidney kidney
27 chr1:226868600-226888200 Genic enhancers Foreskin Melanocyte Primary Cells skin03 Skin
28 chr1:226868800-226874400 Genic enhancers Primary T regulatory cells fromperipheralblood blood
29 chr1:226868800-226874400 Weak transcription Aorta Aorta
30 chr1:226868800-226875200 Weak transcription Small Intestine intestine
31 chr1:226868800-226876000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
32 chr1:226868800-226878000 Weak transcription NHEK skin
33 chr1:226869000-226874200 Weak transcription Fetal Intestine Small intestine
34 chr1:226869000-226874400 Weak transcription NHDF-Ad bronchial
35 chr1:226869000-226875200 Weak transcription Fetal Heart heart
36 chr1:226869000-226878000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
37 chr1:226869000-226880200 Weak transcription Primary monocytes fromperipheralblood blood
38 chr1:226869000-226881800 Enhancers Colon Smooth Muscle Colon
39 chr1:226869000-226884200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
40 chr1:226869000-226884200 Weak transcription NHLF lung
41 chr1:226869000-226884400 Weak transcription Rectal Mucosa Donor 29 rectum
42 chr1:226869200-226873800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
43 chr1:226869200-226876000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
44 chr1:226869400-226878000 Genic enhancers Primary T helper cells fromperipheralblood blood
45 chr1:226869400-226878400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
46 chr1:226869800-226875600 Genic enhancers Primary mononuclear cells fromperipheralblood Blood
47 chr1:226870000-226874400 Weak transcription Fetal Brain Male brain
48 chr1:226870000-226876000 Weak transcription Fetal Brain Female brain
49 chr1:226870000-226888800 Genic enhancers Primary T cells fromperipheralblood blood
50 chr1:226870200-226874000 Genic enhancers Primary Natural Killer cells fromperipheralblood blood

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015