The 2.0 version of rSNPBase

Variant report

Variant rs3754403
Chromosome Location chr1:226876482-226876483
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:108 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:226865600-226878000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
2 chr1:226868200-226877400 Enhancers Left Ventricle heart
3 chr1:226868200-226884600 Enhancers Brain Substantia Nigra brain
4 chr1:226868400-226876800 Genic enhancers Fetal Thymus thymus
5 chr1:226868400-226876800 Genic enhancers Thymus Thymus
6 chr1:226868400-226877400 Enhancers Psoas Muscle Psoas
7 chr1:226868400-226880600 Enhancers Brain Anterior Caudate brain
8 chr1:226868400-226881200 Enhancers Skeletal Muscle Male skeletal muscle
9 chr1:226868400-226881400 Enhancers Brain Angular Gyrus brain
10 chr1:226868400-226881800 Enhancers Fetal Muscle Leg muscle
11 chr1:226868600-226877200 Enhancers Skeletal Muscle Female skeletal muscle
12 chr1:226868600-226878000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
13 chr1:226868600-226881200 Enhancers Adipose Nuclei Adipose
14 chr1:226868600-226884800 Weak transcription Fetal Kidney kidney
15 chr1:226868600-226888200 Genic enhancers Foreskin Melanocyte Primary Cells skin03 Skin
16 chr1:226868800-226878000 Weak transcription NHEK skin
17 chr1:226869000-226878000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
18 chr1:226869000-226880200 Weak transcription Primary monocytes fromperipheralblood blood
19 chr1:226869000-226881800 Enhancers Colon Smooth Muscle Colon
20 chr1:226869000-226884200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
21 chr1:226869000-226884200 Weak transcription NHLF lung
22 chr1:226869000-226884400 Weak transcription Rectal Mucosa Donor 29 rectum
23 chr1:226869400-226878000 Genic enhancers Primary T helper cells fromperipheralblood blood
24 chr1:226869400-226878400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
25 chr1:226870000-226888800 Genic enhancers Primary T cells fromperipheralblood blood
26 chr1:226870400-226878200 Weak transcription Stomach Mucosa stomach
27 chr1:226871000-226878000 Weak transcription Breast Myoepithelial Primary Cells Breast
28 chr1:226871000-226879600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
29 chr1:226871800-226877200 Enhancers Fetal Muscle Trunk muscle
30 chr1:226871800-226877200 Enhancers Right Atrium heart
31 chr1:226871800-226878000 Genic enhancers Primary T helper cells PMA-I stimulated --
32 chr1:226872000-226881000 Enhancers Right Ventricle heart
33 chr1:226872600-226878000 Weak transcription Dnd41 blood
34 chr1:226872800-226876600 Genic enhancers Foreskin Melanocyte Primary Cells skin01 Skin
35 chr1:226872800-226890000 Weak transcription Pancreas Pancrea
36 chr1:226873000-226877200 Enhancers Duodenum Smooth Muscle Duodenum
37 chr1:226873400-226876800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
38 chr1:226873400-226877200 Genic enhancers Primary T helper naive cells from peripheral blood blood
39 chr1:226873400-226884600 Weak transcription Gastric stomach
40 chr1:226873800-226877000 Enhancers Primary T helper 17 cells PMA-I stimulated --
41 chr1:226874000-226877000 Enhancers Primary Natural Killer cells fromperipheralblood blood
42 chr1:226874000-226877400 Enhancers Placenta Placenta
43 chr1:226874200-226877000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
44 chr1:226874200-226879800 Weak transcription Primary neutrophils fromperipheralblood blood
45 chr1:226874400-226876600 Enhancers Primary hematopoietic stem cells blood
46 chr1:226874400-226877000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
47 chr1:226874400-226877200 Enhancers NHDF-Ad bronchial
48 chr1:226874400-226877800 Enhancers Fetal Brain Male brain
49 chr1:226874400-226880000 Enhancers Brain Germinal Matrix brain
50 chr1:226874400-226885200 Weak transcription Colonic Mucosa Colon

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Last update: Aug 31, 2015