The 2.0 version of rSNPBase

Variant report

Variant rs3768400
Chromosome Location chr1:226885394-226885395
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:103 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:226868600-226888200 Genic enhancers Foreskin Melanocyte Primary Cells skin03 Skin
2 chr1:226870000-226888800 Genic enhancers Primary T cells fromperipheralblood blood
3 chr1:226872800-226890000 Weak transcription Pancreas Pancrea
4 chr1:226876800-226887600 Strong transcription Monocytes-CD14+_RO01746 blood
5 chr1:226876800-226890400 Genic enhancers Primary T cells from cord blood blood
6 chr1:226877800-226890200 Enhancers Primary T killer naive cells fromperipheralblood blood
7 chr1:226878400-226890800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
8 chr1:226878600-226889400 Weak transcription H9 Cell Line embryonic stem cell
9 chr1:226878600-226889600 Weak transcription Rectal Mucosa Donor 31 rectum
10 chr1:226879000-226886600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
11 chr1:226879200-226890800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
12 chr1:226879800-226890200 Weak transcription Fetal Intestine Large intestine
13 chr1:226880200-226888800 Genic enhancers Primary T helper cells fromperipheralblood blood
14 chr1:226880200-226888800 Genic enhancers Primary T regulatory cells fromperipheralblood blood
15 chr1:226880400-226886000 Genic enhancers Primary T helper memory cells from peripheral blood 1 blood
16 chr1:226880800-226888800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
17 chr1:226881000-226885600 Weak transcription Lung lung
18 chr1:226881000-226889600 Weak transcription Sigmoid Colon Sigmoid Colon
19 chr1:226881200-226890600 Weak transcription Aorta Aorta
20 chr1:226881600-226888600 Genic enhancers Primary B cells from cord blood blood
21 chr1:226882200-226886800 Genic enhancers Primary mononuclear cells fromperipheralblood Blood
22 chr1:226882400-226886000 Enhancers Brain Dorsolateral Prefrontal Cortex brain
23 chr1:226882400-226887200 Enhancers Brain Angular Gyrus brain
24 chr1:226882400-226890200 Enhancers Skeletal Muscle Female skeletal muscle
25 chr1:226882400-226890600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
26 chr1:226882800-226885800 Enhancers Skeletal Muscle Male skeletal muscle
27 chr1:226882800-226888600 Genic enhancers Primary T cells effector/memory enriched fromperipheralblood blood
28 chr1:226883000-226886200 Enhancers Brain Inferior Temporal Lobe brain
29 chr1:226883000-226886800 Enhancers Cortex derived primary cultured neurospheres brain
30 chr1:226883200-226886400 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
31 chr1:226883200-226886400 Enhancers Esophagus oesophagus
32 chr1:226883200-226886600 Genic enhancers Fetal Muscle Trunk muscle
33 chr1:226883200-226886600 Genic enhancers Fetal Muscle Leg muscle
34 chr1:226883200-226887200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
35 chr1:226883200-226887200 Genic enhancers Foreskin Melanocyte Primary Cells skin01 Skin
36 chr1:226883200-226887200 Strong transcription Fetal Intestine Small intestine
37 chr1:226883200-226887200 Genic enhancers Fetal Thymus thymus
38 chr1:226883200-226887400 Strong transcription Dnd41 blood
39 chr1:226883200-226887600 Genic enhancers Primary Natural Killer cells fromperipheralblood blood
40 chr1:226883200-226887800 Strong transcription Primary monocytes fromperipheralblood blood
41 chr1:226883200-226888800 Genic enhancers Primary T helper naive cells from peripheral blood blood
42 chr1:226883400-226887200 Genic enhancers Spleen Spleen
43 chr1:226883400-226890200 Enhancers Rectal Smooth Muscle rectum
44 chr1:226883600-226885400 Enhancers Primary T helper 17 cells PMA-I stimulated --
45 chr1:226883600-226885800 Genic enhancers Fetal Stomach stomach
46 chr1:226883600-226887000 Enhancers HMEC breast
47 chr1:226883600-226887600 Strong transcription Primary hematopoietic stem cells short term culture blood
48 chr1:226883800-226885800 Weak transcription Breast Myoepithelial Primary Cells Breast
49 chr1:226883800-226887200 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
50 chr1:226883800-226888600 Weak transcription Right Ventricle heart

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Last update: Aug 31, 2015