Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1124377	0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12072939	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12735680	0.93[AMR][1000 genomes]
rs16846351	1.00[AFR][1000 genomes]
rs16846357	1.00[AFR][1000 genomes]
rs16846413	1.00[AFR][1000 genomes]
rs16846452	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs16846458	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs16846461	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs16846464	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs16846466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3754413	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs3768400	1.00[AFR][1000 genomes]
rs3768416	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs3820647	0.83[AMR][1000 genomes]
rs41490347	0.93[AMR][1000 genomes]
rs4653464	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs4653763	1.00[AFR][1000 genomes]
rs4653769	0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4653770	0.93[AMR][1000 genomes]
rs56095953	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs60932168	1.00[AFR][1000 genomes]
rs835653	0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997468	chr1:226858660-226975311	Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv535316	chr1:226858660-226975311	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:226940600-226943600	Enhancers	K562	blood
2	chr1:226940600-226944000	Enhancers	Fetal Thymus	thymus
3	chr1:226941000-226944000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr1:226941200-226943800	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr1:226941200-226943800	Enhancers	Thymus	Thymus
6	chr1:226941400-226943600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr1:226941400-226943600	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr1:226941400-226943800	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr1:226941600-226943600	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr1:226942000-226943800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr1:226942000-226949200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr1:226942000-226950200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr1:226942200-226943400	Enhancers	Primary T cells fromperipheralblood	blood
14	chr1:226942600-226943600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr1:226942600-226943600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr1:226943000-226947600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr1:226943200-226944600	Enhancers	Primary T cells from cord blood	blood

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