Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PSEN2-3	chr1:226969202-226969445	NONHSAT009903

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1124377	0.90[AMR][1000 genomes]
rs12072939	0.87[AMR][1000 genomes]
rs12735680	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16846452	0.86[AMR][1000 genomes]
rs16846458	0.88[JPT][hapmap];0.86[AMR][1000 genomes]
rs16846461	0.86[AMR][1000 genomes]
rs16846464	0.86[AMR][1000 genomes]
rs16846466	0.93[AMR][1000 genomes]
rs3754413	1.00[JPT][hapmap]
rs3768416	1.00[JPT][hapmap]
rs3820647	1.00[JPT][hapmap]
rs41490347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4653464	1.00[JPT][hapmap]
rs4653769	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs59173465	0.93[AMR][1000 genomes]
rs708763	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs835653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs835656	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs861351	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997468	chr1:226858660-226975311	Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv535316	chr1:226858660-226975311	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:226960600-226969600	Weak transcription	Brain Anterior Caudate	brain
2	chr1:226960600-226970000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr1:226966600-226969600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr1:226966600-226986400	Weak transcription	Right Atrium	heart
5	chr1:226966800-226969800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr1:226966800-226971800	Weak transcription	Fetal Muscle Leg	muscle
7	chr1:226967000-226971200	Weak transcription	HUVEC	blood vessel
8	chr1:226967000-226971600	Weak transcription	Adipose Nuclei	Adipose
9	chr1:226967400-226972000	Weak transcription	NHDF-Ad	bronchial
10	chr1:226967600-226970800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr1:226967600-226971600	Weak transcription	Stomach Smooth Muscle	stomach
12	chr1:226967600-226973000	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr1:226967800-226971000	Weak transcription	Colon Smooth Muscle	Colon
14	chr1:226967800-226971200	Weak transcription	Fetal Stomach	stomach
15	chr1:226967800-226971200	Weak transcription	HSMMtube	muscle
16	chr1:226967800-226972000	Weak transcription	GM12878-XiMat	blood
17	chr1:226968000-226971800	Weak transcription	Fetal Intestine Small	intestine
18	chr1:226968000-226975000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr1:226969200-226969600	Enhancers	Brain Hippocampus Middle	brain
20	chr1:226969200-226974400	Enhancers	Brain Substantia Nigra	brain

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