Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1124377	0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12072939	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12735680	0.86[AMR][1000 genomes]
rs16846351	1.00[AFR][1000 genomes]
rs16846357	1.00[AFR][1000 genomes]
rs16846413	1.00[AFR][1000 genomes]
rs16846452	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs16846458	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs16846461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs16846466	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3754406	0.86[AMR][1000 genomes]
rs3754407	0.86[AMR][1000 genomes]
rs3754413	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs3754417	0.83[AMR][1000 genomes]
rs3768397	0.86[AMR][1000 genomes]
rs3768400	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs3768416	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs3820647	0.90[AMR][1000 genomes]
rs41490347	0.86[AMR][1000 genomes]
rs4653464	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4653763	1.00[AFR][1000 genomes]
rs4653769	0.83[AMR][1000 genomes]
rs4653770	0.86[AMR][1000 genomes]
rs56095953	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs59173465	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs60932168	1.00[AFR][1000 genomes]
rs835653	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997468	chr1:226858660-226975311	Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv535316	chr1:226858660-226975311	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:226936400-226941000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr1:226936400-226941200	Weak transcription	Primary T cells from cord blood	blood
3	chr1:226936400-226941200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr1:226936400-226941400	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr1:226937400-226941600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr1:226938600-226940200	Enhancers	Fetal Thymus	thymus
7	chr1:226938800-226939800	Enhancers	Thymus	Thymus

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