Variant report

Variant	rs16846466
Chromosome Location	chr1:226939799-226939800
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1124377	0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12072939	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12735680	0.93[AMR][1000 genomes]
rs16846351	1.00[ASW][hapmap];1.00[AFR][1000 genomes]
rs16846357	1.00[AFR][1000 genomes]
rs16846413	1.00[AFR][1000 genomes]
rs16846452	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs16846458	0.86[JPT][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs16846461	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs16846464	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs16846590	0.82[CHB][hapmap]
rs3754407	1.00[ASW][hapmap]
rs3754409	1.00[ASW][hapmap]
rs3754413	1.00[ASW][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs3768400	1.00[AFR][1000 genomes]
rs3768416	1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs3820647	1.00[JPT][hapmap];0.82[MEX][hapmap];0.83[AMR][1000 genomes]
rs41440951	1.00[ASW][hapmap]
rs41490347	0.93[AMR][1000 genomes]
rs4653464	1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs4653763	1.00[AFR][1000 genomes]
rs4653769	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4653770	0.93[AMR][1000 genomes]
rs56095953	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs59173465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60932168	1.00[AFR][1000 genomes]
rs6678940	0.82[CHB][hapmap]
rs835653	0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997468	chr1:226858660-226975311	Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv535316	chr1:226858660-226975311	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:226936400-226941000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr1:226936400-226941200	Weak transcription	Primary T cells from cord blood	blood
3	chr1:226936400-226941200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr1:226936400-226941400	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr1:226937400-226941600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr1:226938600-226940200	Enhancers	Fetal Thymus	thymus
7	chr1:226938800-226939800	Enhancers	Thymus	Thymus
8	chr1:226939400-226940400	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr1:226939600-226939800	Enhancers	Brain Anterior Caudate	brain

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