Variant report

Variant	rs3755207
Chromosome Location	chr2:36678210-36678211
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:36677912..36680893-chr2:36680931..36685254,3	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1523788	0.84[EUR][1000 genomes]
rs17018790	0.89[ASN][1000 genomes]
rs2110928	0.84[EUR][1000 genomes]
rs3770879	0.92[ASN][1000 genomes]
rs3770883	0.85[EUR][1000 genomes]
rs3770897	0.81[EUR][1000 genomes]
rs3770899	0.83[EUR][1000 genomes]
rs57785523	0.83[EUR][1000 genomes]
rs60808817	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36640200-36680000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:36651800-36686800	Weak transcription	Colonic Mucosa	Colon
3	chr2:36660600-36682600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr2:36660600-36683000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:36660800-36695600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr2:36661600-36683000	Genic enhancers	HUVEC	blood vessel
7	chr2:36666200-36681200	Genic enhancers	Osteobl	bone
8	chr2:36666400-36686800	Weak transcription	Gastric	stomach
9	chr2:36666600-36683400	Genic enhancers	NHLF	lung
10	chr2:36668200-36678400	Weak transcription	Small Intestine	intestine
11	chr2:36668800-36690200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr2:36669200-36688200	Weak transcription	Thymus	Thymus
13	chr2:36669400-36688000	Weak transcription	Fetal Thymus	thymus
14	chr2:36669600-36683800	Weak transcription	Brain Germinal Matrix	brain
15	chr2:36669800-36679800	Weak transcription	Primary B cells from peripheral blood	blood
16	chr2:36670000-36678800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr2:36670000-36682200	Genic enhancers	NHDF-Ad	bronchial
18	chr2:36670000-36688200	Weak transcription	Primary T cells from cord blood	blood
19	chr2:36670400-36682600	Weak transcription	Brain Substantia Nigra	brain
20	chr2:36670400-36683000	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr2:36670800-36679000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr2:36670800-36682000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr2:36670800-36682800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr2:36671200-36682600	Weak transcription	Brain Hippocampus Middle	brain
25	chr2:36672200-36680000	Strong transcription	HUES6 Cell Line	embryonic stem cell
26	chr2:36672400-36683600	Weak transcription	Duodenum Mucosa	Duodenum
27	chr2:36672600-36678600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr2:36672800-36678400	Strong transcription	HUES48 Cell Line	embryonic stem cell
29	chr2:36672800-36679600	Strong transcription	HUES64 Cell Line	embryonic stem cell
30	chr2:36672800-36682600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr2:36672800-36683400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr2:36672800-36688000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr2:36673600-36688000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr2:36674000-36682000	Weak transcription	Liver	Liver
35	chr2:36674000-36682600	Weak transcription	Brain Angular Gyrus	brain
36	chr2:36674000-36682600	Weak transcription	Fetal Kidney	kidney
37	chr2:36674600-36678400	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr2:36674600-36679000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr2:36675200-36678800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr2:36675400-36679600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr2:36675400-36683400	Genic enhancers	Muscle Satellite Cultured Cells	--
42	chr2:36675400-36688000	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr2:36675600-36679000	Genic enhancers	NHEK	skin
44	chr2:36675600-36679600	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr2:36675600-36680000	Weak transcription	Primary hematopoietic stem cells	blood
46	chr2:36676000-36683000	Genic enhancers	HSMM	muscle
47	chr2:36676200-36678400	Enhancers	Fetal Intestine Large	intestine
48	chr2:36676200-36679200	Enhancers	Psoas Muscle	Psoas
49	chr2:36676200-36679800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr2:36676200-36682600	Genic enhancers	HepG2	liver

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