Variant report

Variant	rs1523788
Chromosome Location	chr2:36652386-36652387
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:36646028..36647836-chr2:36650769..36652474,2	MCF-7	breast:
2	chr2:36646546..36648812-chr2:36651208..36653826,3	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11682688	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1477048	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17018699	0.82[EUR][1000 genomes]
rs17018723	0.84[EUR][1000 genomes]
rs17018798	0.95[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs2110928	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2192920	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2276673	0.94[ASN][1000 genomes]
rs34439217	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs3755207	0.84[EUR][1000 genomes]
rs3770883	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs3770885	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs3770886	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs3770891	0.81[EUR][1000 genomes]
rs3770897	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3770899	0.85[CEU][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3770903	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3770910	0.90[EUR][1000 genomes]
rs3770914	0.84[EUR][1000 genomes]
rs3770922	0.83[EUR][1000 genomes]
rs3770926	0.84[EUR][1000 genomes]
rs3770927	0.84[EUR][1000 genomes]
rs3770930	0.84[EUR][1000 genomes]
rs3821157	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs3821164	0.84[EUR][1000 genomes]
rs56036545	0.81[EUR][1000 genomes]
rs57393342	0.92[ASN][1000 genomes]
rs57431226	0.81[EUR][1000 genomes]
rs57785523	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs58185473	0.81[EUR][1000 genomes]
rs62136162	0.81[EUR][1000 genomes]
rs6729186	0.95[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs7419733	0.82[AFR][1000 genomes]
rs7571902	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs848498	0.95[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs848500	0.95[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs848501	0.91[CHB][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs848503	0.90[CHB][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs848507	0.91[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs876458	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2756915	chr2:36622906-36657305	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2759041	chr2:36622906-36657305	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36636800-36656000	Weak transcription	Esophagus	oesophagus
2	chr2:36640000-36656000	Genic enhancers	A549	lung
3	chr2:36640200-36653400	Genic enhancers	HUVEC	blood vessel
4	chr2:36640200-36680000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr2:36641200-36659200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr2:36644200-36657200	Weak transcription	Brain Anterior Caudate	brain
7	chr2:36644200-36660000	Weak transcription	Fetal Brain Female	brain
8	chr2:36644400-36653000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr2:36644400-36656800	Weak transcription	Fetal Stomach	stomach
10	chr2:36644400-36657200	Weak transcription	Colon Smooth Muscle	Colon
11	chr2:36644400-36659600	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr2:36644400-36665600	Weak transcription	Gastric	stomach
13	chr2:36644600-36653000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr2:36644600-36656600	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr2:36646200-36654600	Weak transcription	Stomach Smooth Muscle	stomach
16	chr2:36647200-36654600	Weak transcription	Small Intestine	intestine
17	chr2:36648000-36654400	Strong transcription	HSMM	muscle
18	chr2:36648000-36656800	Weak transcription	Right Atrium	heart
19	chr2:36648000-36657000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr2:36648000-36659600	Weak transcription	Brain Angular Gyrus	brain
21	chr2:36648000-36659800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr2:36648000-36660200	Weak transcription	Pancreas	Pancrea
23	chr2:36648200-36654400	Weak transcription	Spleen	Spleen
24	chr2:36648200-36654600	Weak transcription	Lung	lung
25	chr2:36648200-36654800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr2:36648200-36656000	Weak transcription	Aorta	Aorta
27	chr2:36648200-36660200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr2:36648200-36660400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr2:36648400-36657200	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr2:36648600-36657200	Weak transcription	Rectal Smooth Muscle	rectum
31	chr2:36648600-36659600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr2:36649000-36654400	Weak transcription	Ovary	ovary
33	chr2:36649000-36657600	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr2:36649400-36654600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr2:36649600-36662200	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr2:36649800-36653400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr2:36650000-36653200	Strong transcription	NH-A	brain
38	chr2:36650000-36653600	Strong transcription	Muscle Satellite Cultured Cells	--
39	chr2:36650000-36657400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr2:36650400-36653400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr2:36650400-36653600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr2:36650600-36652600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr2:36650600-36659600	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr2:36650600-36676600	Weak transcription	Stomach Mucosa	stomach
45	chr2:36650800-36654800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr2:36651200-36652400	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr2:36651200-36652400	Enhancers	Right Ventricle	heart
48	chr2:36651200-36653000	Strong transcription	Placenta	Placenta
49	chr2:36651200-36654600	Genic enhancers	NHLF	lung
50	chr2:36651400-36652400	Enhancers	H1 Cell Line	embryonic stem cell

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