Variant report

Variant	rs11682688
Chromosome Location	chr2:36653937-36653938
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:36653170..36656260-chr2:36656340..36659341,3	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1477048	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1523788	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17018699	0.83[TSI][hapmap]
rs17018798	0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs2110928	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2192920	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2276673	0.93[ASN][1000 genomes]
rs34439217	0.97[ASN][1000 genomes]
rs3770883	0.85[EUR][1000 genomes]
rs3770885	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.90[ASN][1000 genomes]
rs3770886	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.92[ASN][1000 genomes]
rs3770897	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3770899	0.87[MEX][hapmap];0.88[TSI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3770903	0.90[ASN][1000 genomes]
rs3770922	0.81[MEX][hapmap];0.83[TSI][hapmap]
rs3821157	0.95[CHB][hapmap];0.93[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs57393342	0.92[ASN][1000 genomes]
rs57785523	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6729186	0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs7571902	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs848498	0.95[CHB][hapmap];0.89[CHD][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs848500	0.95[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs848501	0.95[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs848503	0.91[CHB][hapmap];0.91[CHD][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs848507	0.95[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs876458	0.81[MEX][hapmap];0.83[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2756915	chr2:36622906-36657305	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2759041	chr2:36622906-36657305	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11682688	CRIM1	cis	lymphoblastoid	seeQTL

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36636800-36656000	Weak transcription	Esophagus	oesophagus
2	chr2:36640000-36656000	Genic enhancers	A549	lung
3	chr2:36640200-36680000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr2:36641200-36659200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr2:36644200-36657200	Weak transcription	Brain Anterior Caudate	brain
6	chr2:36644200-36660000	Weak transcription	Fetal Brain Female	brain
7	chr2:36644400-36656800	Weak transcription	Fetal Stomach	stomach
8	chr2:36644400-36657200	Weak transcription	Colon Smooth Muscle	Colon
9	chr2:36644400-36659600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr2:36644400-36665600	Weak transcription	Gastric	stomach
11	chr2:36644600-36656600	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr2:36646200-36654600	Weak transcription	Stomach Smooth Muscle	stomach
13	chr2:36647200-36654600	Weak transcription	Small Intestine	intestine
14	chr2:36648000-36654400	Strong transcription	HSMM	muscle
15	chr2:36648000-36656800	Weak transcription	Right Atrium	heart
16	chr2:36648000-36657000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr2:36648000-36659600	Weak transcription	Brain Angular Gyrus	brain
18	chr2:36648000-36659800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr2:36648000-36660200	Weak transcription	Pancreas	Pancrea
20	chr2:36648200-36654400	Weak transcription	Spleen	Spleen
21	chr2:36648200-36654600	Weak transcription	Lung	lung
22	chr2:36648200-36654800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr2:36648200-36656000	Weak transcription	Aorta	Aorta
24	chr2:36648200-36660200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr2:36648200-36660400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr2:36648400-36657200	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr2:36648600-36657200	Weak transcription	Rectal Smooth Muscle	rectum
28	chr2:36648600-36659600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr2:36649000-36654400	Weak transcription	Ovary	ovary
30	chr2:36649000-36657600	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr2:36649400-36654600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr2:36649600-36662200	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr2:36650000-36657400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr2:36650600-36659600	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr2:36650600-36676600	Weak transcription	Stomach Mucosa	stomach
36	chr2:36650800-36654800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr2:36651200-36654600	Genic enhancers	NHLF	lung
38	chr2:36651400-36658400	Genic enhancers	Osteobl	bone
39	chr2:36651400-36658800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr2:36651600-36657200	Weak transcription	Fetal Heart	heart
41	chr2:36651600-36659600	Weak transcription	Fetal Intestine Large	intestine
42	chr2:36651600-36668400	Weak transcription	Fetal Intestine Small	intestine
43	chr2:36651600-36668400	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr2:36651800-36654400	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr2:36651800-36655000	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr2:36651800-36660200	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr2:36651800-36668400	Weak transcription	Duodenum Mucosa	Duodenum
48	chr2:36651800-36686800	Weak transcription	Colonic Mucosa	Colon
49	chr2:36652000-36654800	Weak transcription	NHEK	skin
50	chr2:36652000-36656600	Weak transcription	HSMMtube	muscle

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