Variant report

Variant	rs17018798
Chromosome Location	chr2:36669645-36669646
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11673762	1.00[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11682688	0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs1477048	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1523788	0.95[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs17018790	0.91[CEU][hapmap];0.95[EUR][1000 genomes]
rs2110928	0.96[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs2276673	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34439217	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3770883	0.81[EUR][1000 genomes]
rs3770884	0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3770885	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3770886	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3770887	1.00[CEU][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3770888	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3770891	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs3770903	0.84[ASN][1000 genomes]
rs3821157	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56036545	0.98[EUR][1000 genomes]
rs57393342	0.88[ASN][1000 genomes]
rs57431226	0.99[EUR][1000 genomes]
rs58185473	0.99[EUR][1000 genomes]
rs62136162	0.99[EUR][1000 genomes]
rs6729186	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7571902	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs848498	1.00[CHB][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes]
rs848500	1.00[CHB][hapmap];0.84[JPT][hapmap];0.87[YRI][hapmap];0.88[ASN][1000 genomes]
rs848501	0.96[CHB][hapmap];0.85[JPT][hapmap];0.84[YRI][hapmap];0.86[ASN][1000 genomes]
rs848503	0.95[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs848507	0.96[CHB][hapmap];0.85[JPT][hapmap];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36640200-36680000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:36650600-36676600	Weak transcription	Stomach Mucosa	stomach
3	chr2:36651800-36686800	Weak transcription	Colonic Mucosa	Colon
4	chr2:36660400-36671800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr2:36660600-36669800	Weak transcription	Brain Angular Gyrus	brain
6	chr2:36660600-36682600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr2:36660600-36683000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr2:36660800-36670000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr2:36660800-36670200	Weak transcription	Fetal Brain Female	brain
10	chr2:36660800-36678000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr2:36660800-36695600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr2:36661000-36669800	Weak transcription	Fetal Brain Male	brain
13	chr2:36661400-36676400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr2:36661600-36683000	Genic enhancers	HUVEC	blood vessel
15	chr2:36665200-36672000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr2:36666200-36670600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr2:36666200-36681200	Genic enhancers	Osteobl	bone
18	chr2:36666400-36676200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr2:36666400-36676400	Weak transcription	Pancreas	Pancrea
20	chr2:36666400-36686800	Weak transcription	Gastric	stomach
21	chr2:36666600-36669800	Weak transcription	Brain Anterior Caudate	brain
22	chr2:36666600-36675600	Strong transcription	NHEK	skin
23	chr2:36666600-36683400	Genic enhancers	NHLF	lung
24	chr2:36666800-36676600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr2:36667200-36671800	Strong transcription	NH-A	brain
26	chr2:36667800-36669800	Weak transcription	Psoas Muscle	Psoas
27	chr2:36667800-36670000	Enhancers	Primary hematopoietic stem cells	blood
28	chr2:36667800-36672400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr2:36667800-36672600	Strong transcription	HepG2	liver
30	chr2:36668000-36672000	Strong transcription	HUES64 Cell Line	embryonic stem cell
31	chr2:36668000-36672600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr2:36668000-36676600	Weak transcription	Fetal Heart	heart
33	chr2:36668200-36669800	Enhancers	Primary monocytes fromperipheralblood	blood
34	chr2:36668200-36669800	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr2:36668200-36670800	Genic enhancers	HSMM	muscle
36	chr2:36668200-36671600	Strong transcription	HUES6 Cell Line	embryonic stem cell
37	chr2:36668200-36672200	Strong transcription	Fetal Intestine Large	intestine
38	chr2:36668200-36676400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr2:36668200-36677200	Strong transcription	Hela-S3	cervix
40	chr2:36668200-36678400	Weak transcription	Small Intestine	intestine
41	chr2:36668400-36669800	Enhancers	Primary B cells from peripheral blood	blood
42	chr2:36668400-36670000	Strong transcription	Fetal Intestine Small	intestine
43	chr2:36668400-36670000	Genic enhancers	HSMMtube	muscle
44	chr2:36668400-36671400	Strong transcription	H9 Cell Line	embryonic stem cell
45	chr2:36668400-36671600	Strong transcription	Duodenum Mucosa	Duodenum
46	chr2:36668400-36672000	Strong transcription	HUES48 Cell Line	embryonic stem cell
47	chr2:36668400-36672600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
48	chr2:36668400-36673000	Strong transcription	Placenta Amnion	Placenta Amnion
49	chr2:36668600-36669800	Genic enhancers	Fetal Muscle Leg	muscle
50	chr2:36668600-36670000	Transcr. at gene 5' and 3'	NHDF-Ad	bronchial

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