Variant report

Variant	rs11673762
Chromosome Location	chr2:36665932-36665933
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:36659185..36660941-chr2:36665845..36668463,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11124512	0.87[CHB][hapmap];0.90[JPT][hapmap]
rs1477048	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs17018688	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs17018699	0.91[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes]
rs17018723	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs17018790	0.91[CEU][hapmap];0.95[EUR][1000 genomes]
rs17018798	1.00[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2276673	1.00[EUR][1000 genomes]
rs34439217	0.99[EUR][1000 genomes]
rs3770883	0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3770884	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3770885	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3770886	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3770887	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3770888	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3770891	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3770897	0.91[ASN][1000 genomes]
rs3770899	0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs3770910	0.87[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs3770914	0.94[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs3770922	0.91[CHB][hapmap];0.89[JPT][hapmap]
rs3770927	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs3770930	0.81[ASN][1000 genomes]
rs3821157	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs3821164	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs4670552	0.82[CHB][hapmap]
rs56036545	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57431226	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57785523	0.82[AFR][1000 genomes]
rs58185473	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62136162	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6729186	1.00[CEU][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7571902	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs848503	0.82[CHB][hapmap]
rs876458	0.91[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36640200-36680000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:36650600-36676600	Weak transcription	Stomach Mucosa	stomach
3	chr2:36651600-36668400	Weak transcription	Fetal Intestine Small	intestine
4	chr2:36651600-36668400	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr2:36651800-36668400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr2:36651800-36686800	Weak transcription	Colonic Mucosa	Colon
7	chr2:36652200-36668600	Weak transcription	Primary B cells from cord blood	blood
8	chr2:36653000-36667800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr2:36653400-36669400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr2:36658000-36668400	Weak transcription	Esophagus	oesophagus
11	chr2:36660400-36671800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr2:36660600-36666200	Weak transcription	Pancreas	Pancrea
13	chr2:36660600-36668200	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr2:36660600-36668200	Weak transcription	Fetal Intestine Large	intestine
15	chr2:36660600-36668400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr2:36660600-36668400	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr2:36660600-36668600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr2:36660600-36669600	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr2:36660600-36669600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr2:36660600-36669800	Weak transcription	Brain Angular Gyrus	brain
21	chr2:36660600-36682600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr2:36660600-36683000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr2:36660800-36666000	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr2:36660800-36666200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr2:36660800-36666200	Weak transcription	Lung	lung
26	chr2:36660800-36668000	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr2:36660800-36668400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr2:36660800-36668400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr2:36660800-36668400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr2:36660800-36668400	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr2:36660800-36668600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr2:36660800-36668600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr2:36660800-36668600	Weak transcription	Spleen	Spleen
34	chr2:36660800-36669600	Weak transcription	Fetal Muscle Trunk	muscle
35	chr2:36660800-36670000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr2:36660800-36670200	Weak transcription	Fetal Brain Female	brain
37	chr2:36660800-36678000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr2:36660800-36695600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr2:36661000-36668400	Weak transcription	Fetal Stomach	stomach
40	chr2:36661000-36668600	Weak transcription	Fetal Kidney	kidney
41	chr2:36661000-36669200	Weak transcription	Brain Hippocampus Middle	brain
42	chr2:36661000-36669800	Weak transcription	Fetal Brain Male	brain
43	chr2:36661200-36668800	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr2:36661400-36668400	Weak transcription	Fetal Lung	lung
45	chr2:36661400-36676400	Weak transcription	Brain Cingulate Gyrus	brain
46	chr2:36661600-36666000	Weak transcription	Brain Substantia Nigra	brain
47	chr2:36661600-36683000	Genic enhancers	HUVEC	blood vessel
48	chr2:36661800-36668400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr2:36662000-36668600	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr2:36662200-36666000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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