Variant report

Variant	rs3770910
Chromosome Location	chr2:36639259-36639260
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11124512	0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11673762	0.87[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs1523788	0.90[EUR][1000 genomes]
rs17018688	0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17018699	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17018723	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2110928	0.90[EUR][1000 genomes]
rs2192920	0.99[EUR][1000 genomes]
rs3770883	0.96[CHB][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3770884	0.91[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs3770887	0.91[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs3770888	0.87[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs3770891	0.91[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs3770897	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3770899	0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3770903	0.95[EUR][1000 genomes]
rs3770914	0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3770922	0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3770926	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3770927	0.96[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3770930	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3770937	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3821164	0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4670552	0.86[JPT][hapmap]
rs56036545	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs57431226	0.87[ASN][1000 genomes]
rs57785523	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs58185473	0.85[ASN][1000 genomes]
rs62136162	0.82[ASN][1000 genomes]
rs876458	0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2756915	chr2:36622906-36657305	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2759041	chr2:36622906-36657305	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36604400-36640400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr2:36604400-36640600	Weak transcription	Brain Cingulate Gyrus	brain
3	chr2:36618600-36643000	Genic enhancers	Osteobl	bone
4	chr2:36624800-36643600	Weak transcription	Colonic Mucosa	Colon
5	chr2:36625600-36643800	Weak transcription	Fetal Intestine Small	intestine
6	chr2:36625800-36642200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr2:36626000-36643800	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr2:36630200-36641000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr2:36631000-36639600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr2:36631600-36644600	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr2:36631800-36639600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr2:36632000-36640200	Weak transcription	Fetal Brain Female	brain
13	chr2:36632200-36648000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr2:36632400-36639600	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr2:36633400-36639600	Enhancers	Adipose Nuclei	Adipose
16	chr2:36633400-36639800	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr2:36633400-36640600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr2:36635000-36640600	Enhancers	NHDF-Ad	bronchial
19	chr2:36635200-36639600	Weak transcription	Brain Angular Gyrus	brain
20	chr2:36635200-36641000	Enhancers	Fetal Heart	heart
21	chr2:36635600-36641800	Weak transcription	Stomach Smooth Muscle	stomach
22	chr2:36635800-36641600	Weak transcription	Right Atrium	heart
23	chr2:36635800-36641800	Weak transcription	Placenta	Placenta
24	chr2:36635800-36643000	Weak transcription	Fetal Muscle Leg	muscle
25	chr2:36635800-36643800	Weak transcription	Fetal Intestine Large	intestine
26	chr2:36635800-36644000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr2:36635800-36647600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr2:36636000-36640200	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr2:36636000-36640400	Weak transcription	Fetal Stomach	stomach
30	chr2:36636000-36642600	Weak transcription	HMEC	breast
31	chr2:36636000-36647600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr2:36636000-36647600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr2:36636600-36640800	Genic enhancers	HSMM	muscle
34	chr2:36636800-36643600	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr2:36636800-36647600	Weak transcription	Lung	lung
36	chr2:36636800-36656000	Weak transcription	Esophagus	oesophagus
37	chr2:36637200-36641400	Enhancers	Fetal Kidney	kidney
38	chr2:36637400-36640000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr2:36637400-36640400	Weak transcription	Ovary	ovary
40	chr2:36637400-36640800	Weak transcription	Fetal Brain Male	brain
41	chr2:36637400-36641000	Weak transcription	Hela-S3	cervix
42	chr2:36637400-36641800	Weak transcription	Right Ventricle	heart
43	chr2:36637400-36642800	Enhancers	NHLF	lung
44	chr2:36638000-36639400	Enhancers	Rectal Smooth Muscle	rectum
45	chr2:36638000-36640000	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr2:36638000-36642400	Enhancers	Brain Hippocampus Middle	brain
47	chr2:36638000-36644400	Strong transcription	NHEK	skin
48	chr2:36638000-36647800	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr2:36638200-36641000	Weak transcription	Small Intestine	intestine
50	chr2:36638200-36641200	Weak transcription	Left Ventricle	heart

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