Variant report

Variant	rs3770937
Chromosome Location	chr2:36620612-36620613
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:36595497..36597494-chr2:36620242..36622925,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150938	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11124512	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17018688	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17018699	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17018723	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2192920	0.87[EUR][1000 genomes]
rs3770903	0.84[EUR][1000 genomes]
rs3770910	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3770914	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3770922	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3770926	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3770927	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3770930	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3821164	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4670552	0.80[ASN][1000 genomes]
rs876458	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36586200-36626600	Weak transcription	Primary B cells from cord blood	blood
2	chr2:36604400-36640400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr2:36604400-36640600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr2:36604600-36620800	Weak transcription	Brain Hippocampus Middle	brain
5	chr2:36607600-36620800	Weak transcription	Pancreas	Pancrea
6	chr2:36611600-36632400	Weak transcription	Esophagus	oesophagus
7	chr2:36611600-36635400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr2:36613000-36624000	Weak transcription	Small Intestine	intestine
9	chr2:36614800-36621400	Weak transcription	Stomach Mucosa	stomach
10	chr2:36616400-36620800	Weak transcription	Right Atrium	heart
11	chr2:36616400-36621000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr2:36616600-36620800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr2:36616800-36620800	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr2:36616800-36624200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr2:36616800-36631200	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr2:36616800-36635000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr2:36617000-36620800	Weak transcription	Ovary	ovary
18	chr2:36617000-36633400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr2:36617200-36622200	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr2:36617200-36623800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr2:36617200-36624000	Weak transcription	Fetal Intestine Large	intestine
22	chr2:36617200-36624000	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr2:36617200-36625000	Weak transcription	Fetal Intestine Small	intestine
24	chr2:36617200-36630800	Weak transcription	Rectal Smooth Muscle	rectum
25	chr2:36617200-36631200	Weak transcription	Fetal Kidney	kidney
26	chr2:36617200-36633800	Weak transcription	Fetal Lung	lung
27	chr2:36617400-36620800	Genic enhancers	A549	lung
28	chr2:36617400-36620800	Weak transcription	HepG2	liver
29	chr2:36617400-36620800	Weak transcription	HSMMtube	muscle
30	chr2:36617400-36621000	Weak transcription	Colon Smooth Muscle	Colon
31	chr2:36617600-36620800	Weak transcription	Adipose Nuclei	Adipose
32	chr2:36617600-36620800	Weak transcription	Fetal Muscle Leg	muscle
33	chr2:36617600-36620800	Weak transcription	Fetal Stomach	stomach
34	chr2:36617600-36621400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr2:36617600-36624000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr2:36617800-36620800	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr2:36617800-36630600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr2:36617800-36630600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr2:36618200-36624000	Weak transcription	Primary hematopoietic stem cells	blood
40	chr2:36618600-36643000	Genic enhancers	Osteobl	bone
41	chr2:36618800-36621200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
42	chr2:36619200-36621600	Enhancers	HUES48 Cell Line	embryonic stem cell
43	chr2:36619400-36621200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr2:36619400-36621600	Enhancers	HUES64 Cell Line	embryonic stem cell
45	chr2:36619600-36620800	Strong transcription	Muscle Satellite Cultured Cells	--
46	chr2:36619600-36621200	Genic enhancers	HSMM	muscle
47	chr2:36619600-36621200	Genic enhancers	NHEK	skin
48	chr2:36619600-36621600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
49	chr2:36619600-36621800	Enhancers	HUES6 Cell Line	embryonic stem cell
50	chr2:36619600-36622600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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