Variant report

Variant	rs3770914
Chromosome Location	chr2:36636830-36636831
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:36593697..36595696-chr2:36635356..36637149,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11124512	0.86[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11673762	0.94[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs1523788	0.84[EUR][1000 genomes]
rs17018688	0.94[CHB][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17018699	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17018723	0.86[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2110928	0.84[EUR][1000 genomes]
rs2192920	0.93[EUR][1000 genomes]
rs3770883	0.94[CHB][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3770884	0.89[CHB][hapmap];0.95[JPT][hapmap]
rs3770887	0.89[CHB][hapmap];0.95[JPT][hapmap]
rs3770888	0.94[CHB][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs3770891	0.89[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs3770897	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3770899	0.94[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3770903	0.89[EUR][1000 genomes]
rs3770910	0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3770922	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3770926	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3770927	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3770930	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3770937	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3821163	0.80[JPT][hapmap]
rs3821164	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4670552	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs56036545	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs57431226	0.85[ASN][1000 genomes]
rs57785523	0.83[EUR][1000 genomes]
rs58185473	0.83[ASN][1000 genomes]
rs62136162	0.83[ASN][1000 genomes]
rs876458	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2756915	chr2:36622906-36657305	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2759041	chr2:36622906-36657305	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36604400-36640400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr2:36604400-36640600	Weak transcription	Brain Cingulate Gyrus	brain
3	chr2:36618600-36643000	Genic enhancers	Osteobl	bone
4	chr2:36624800-36643600	Weak transcription	Colonic Mucosa	Colon
5	chr2:36625600-36643800	Weak transcription	Fetal Intestine Small	intestine
6	chr2:36625800-36642200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr2:36626000-36643800	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr2:36626600-36637800	Weak transcription	Duodenum Mucosa	Duodenum
9	chr2:36630200-36641000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr2:36631000-36638200	Weak transcription	Colon Smooth Muscle	Colon
11	chr2:36631000-36639000	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr2:36631000-36639600	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr2:36631400-36637000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr2:36631400-36639000	Genic enhancers	Muscle Satellite Cultured Cells	--
15	chr2:36631400-36639000	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr2:36631600-36637800	Weak transcription	Small Intestine	intestine
17	chr2:36631600-36644600	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr2:36631800-36637000	Genic enhancers	HUVEC	blood vessel
19	chr2:36631800-36639600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr2:36632000-36640200	Weak transcription	Fetal Brain Female	brain
21	chr2:36632200-36648000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr2:36632400-36639000	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr2:36632400-36639600	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr2:36632600-36638000	Weak transcription	Brain Substantia Nigra	brain
25	chr2:36632800-36637000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr2:36632800-36637000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr2:36632800-36637200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr2:36633400-36638400	Enhancers	NH-A	brain
29	chr2:36633400-36639600	Enhancers	Adipose Nuclei	Adipose
30	chr2:36633400-36639800	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr2:36633400-36640600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr2:36633600-36639200	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr2:36633800-36637400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr2:36633800-36639200	Enhancers	Fetal Lung	lung
35	chr2:36634000-36637600	Enhancers	iPS-15b Cell Line	embryonic stem cell
36	chr2:36634200-36637200	Enhancers	NHLF	lung
37	chr2:36634600-36637400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr2:36634800-36637400	Enhancers	Ovary	ovary
39	chr2:36634800-36638000	Enhancers	Cortex derived primary cultured neurospheres	brain
40	chr2:36634800-36638800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr2:36635000-36637000	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr2:36635000-36638400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
43	chr2:36635000-36640600	Enhancers	NHDF-Ad	bronchial
44	chr2:36635200-36639600	Weak transcription	Brain Angular Gyrus	brain
45	chr2:36635200-36641000	Enhancers	Fetal Heart	heart
46	chr2:36635400-36637200	Enhancers	Aorta	Aorta
47	chr2:36635400-36637200	Weak transcription	Fetal Kidney	kidney
48	chr2:36635400-36637800	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr2:36635400-36638000	Enhancers	Placenta Amnion	Placenta Amnion
50	chr2:36635400-36638200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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